Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73530 97 / 9e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 73 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 76 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 67 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 67 / 2e-14 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 60 / 7e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 60 / 9e-12 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G08000 57 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G26420 58 / 2e-10 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 56 / 3e-10 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026364 [exp] 195 / 2e-64 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025573 [exp] 76 / 3e-16 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027035 [exp] 73 / 2e-15 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 71 / 1e-14 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 71 / 2e-14 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034685 [exp] 64 / 3e-12 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10029426 [exp] 63 / 1e-11 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10031534 [exp] 60 / 1e-11 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023758 [exp] 60 / 2e-11 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038200 [exp] 110 / 7e-31 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 77 / 2e-18 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 76 / 6e-18 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 78 / 3e-17 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 77 / 6e-17 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 67 / 1e-14 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 67 / 1e-14 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 69 / 2e-14 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G409800 [exp] 67 / 2e-14 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 64 / 3e-13 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10042293 pacid=23153584 polypeptide=Lus10042293 locus=Lus10042293.g ID=Lus10042293.BGIv1.0 annot-version=v1.0 ATGGCGGGTTTGACGACTTCCTCCGTAGCTTCTCCTTATCCAGCTTCCTTCTCCGTAGCTCAGCGACTTCACTACCTGAAATCGACGTCTTCAATTTGCT CCCGCGCCAGTTTTTTGGAGAGCACAGCTCTCCGATTCCCTCGCTCACAATGTACCAGGCGTCAAAGACCTTCATCAGTTTTGGCCTGCCTGCCTACATC GTCATCATCATCATCTGACCCTCCTTCCGCTCCGAAAACCAGGCTCTACATAAGCGGTACTAAGTCCTCTTTATTCCCCTTCTGTAGTTCTGTTCATAGC TCGTTTAAGTTAGCAGGTCTATCATTTCGAACCACTGAAGAGGGTCTGCGAAATGCTTTCCACAGTTTCGGCCAACTAGTGGAAGTTAATCTCGTGATGG ATAAAATTGCAAGACGGCCTAGAGGGTTCGCCTTTGTTCGGTACGCCACCGAAGAGGAATCCGCAAAGGCCATCCAAGGAATGCATGGAAAGGCTGAACA AAACAAGAAACAGACTAGAGCCAAATGA
AA sequence Show only first row Show all	>Lus10042293 pacid=23153584 polypeptide=Lus10042293 locus=Lus10042293.g ID=Lus10042293.BGIv1.0 annot-version=v1.0 MAGLTTSSVASPYPASFSVAQRLHYLKSTSSICSRASFLESTALRFPRSQCTRRQRPSSVLACLPTSSSSSSDPPSAPKTRLYISGTKSSLFPFCSSVHS SFKLAGLSFRTTEEGLRNAFHSFGQLVEVNLVMDKIARRPRGFAFVRYATEEESAKAIQGMHGKAEQNKKQTRAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	0	1
AT4G14385			unknown protein		Lus10021187 [exp]	1.4	0.9142
					Lus10011890 [exp]	3.0	0.9141
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	3.5	0.9225
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	4.4	0.8862
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	11.0	0.8918
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	11.5	0.8903
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	13.4	0.8921
					Lus10002011 [exp]	16.4	0.8866
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	16.6	0.8975
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	17.7	0.8689

Compare expression of checked genes

Lus10042293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.