Plant FIBer expression Database

Lus10042294 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73350 144 / 2e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026363
[exp]
219 / 6e-72 AT1G73350 193 / 2e-61 unknown protein
Lus10031897
[exp]
210 / 4e-69 AT1G73350 238 / 4e-80 unknown protein
Lus10031324
[exp]
82 / 4e-20 ND 107 / 6e-31
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G066700
[exp]
171 / 8e-54 AT1G73350 192 / 7e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10042294 pacid=23153703 polypeptide=Lus10042294 locus=Lus10042294.g ID=Lus10042294.BGIv1.0 annot-version=v1.0
ATGGCGGGAAGGGAAGTGCGAGAATATACAAACCTCACCGATCCCAAAGAGAGGAAACTCGGAAAGGGCAAAGATAAAGTCGACGACGAAGATGTCACTT
TCCACCGCATGGTTGCTAAGATGCAAGAAGTTGCTGGAGAACGTGGGGGCTATCTTCACGGAAGAGGCGCATTGGACAGTGATGACCTACTTTACCTCAA
GGAGCAGATGGAAGCTGAAGAGGATGCAGAACGACTCCTGCGTCGCACTGAGAAAAGGGCATTTGCTGCATTCAAAATATCCTTTTTCTGTGCTGTTTAC
GAATCTGATCATAGTGTGGTTTTATGTCTTAAGCACTCTGTAGACACTTCACCAGCATCAGTTCCACTGCCACTTCGTGTAGAGCCCAAACCGAAGAGTG
GCATAAGGCAGCAGGACCTACTGAAAAAGGTGGTGGAAGTTAAACCAAAACGTCCCAGAATTCCAAATCGAGCAGATGGGGGCATCTCTACCACTGTACG
AAATAATCTCAGTTCGGAGAGTGATGAGAGCAAGCAGACTCCTGCTGGAGAAGAGCTTCCAGAGAAAAACCCTGTGAAAAGCTTGCTAGGGTTAGCATAT
GAAAGTTCTGATGATGAGGACTGA
AA sequence
>Lus10042294 pacid=23153703 polypeptide=Lus10042294 locus=Lus10042294.g ID=Lus10042294.BGIv1.0 annot-version=v1.0
MAGREVREYTNLTDPKERKLGKGKDKVDDEDVTFHRMVAKMQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKISFFCAVY
ESDHSVVLCLKHSVDTSPASVPLPLRVEPKPKSGIRQQDLLKKVVEVKPKRPRIPNRADGGISTTVRNNLSSESDESKQTPAGEELPEKNPVKSLLGLAY
ESSDDED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73350 unknown protein Lus10042294
[exp]
0 1
Lus10031452
[exp]
1.0 0.9311
AT3G57000 nucleolar essential protein-re... Lus10032053
[exp]
2.4 0.9199
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Lus10003074
[exp]
3.0 0.8906
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Lus10015466
[exp]
3.0 0.9190
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Lus10036022
[exp]
3.2 0.8965
AT1G73350 unknown protein Lus10026363
[exp]
3.2 0.8825
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Lus10039948
[exp]
4.6 0.8921
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Lus10013684
[exp]
4.8 0.8634
AT5G45600 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLI... Lus10007555
[exp]
4.9 0.8912
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10027928
[exp]
4.9 0.9108

Lus10042294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.