Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22110 642 / 0 DPB2, CYL2, DBP2, ATDPB2 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026361 [exp] 961 / 0 AT5G22110 733 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039300 [exp] 783 / 0 AT5G22110 743 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF04042 [flax] [poplar] DNA_pol_E_B DNA polymerase alpha/epsilon subunit B CL0671 [flax] [poplar] AAA_lid PF12213 [flax] [poplar] Dpoe2NT DNA polymerases epsilon N terminal
Representative CDS sequence Show only first row Show all	>Lus10042296 pacid=23153775 polypeptide=Lus10042296 locus=Lus10042296.g ID=Lus10042296.BGIv1.0 annot-version=v1.0 ATGAGCAGCAGCGGCGGTGTGGGAAGCTCCCTGAGAAAGTCCATACAGAAGAAGTTCAAGATCAGAGGCTACGCTTTGAAAGTCGACGCTCTTGAAGAGA TCCTTTCCTTCGTCAATCGATACCAAGACGCCGAAGACGAGGCCCTCGACCTCCTCCTCGACCACCTCCTGTCCGGACCTCGGAAATTGGGAGTGAAATC TTCGATTATTGAGAAGGAGCTTGTGAGTCGTGCCGTAAGCTCGTTACTGGAAGCTGACGAAGCTGTGGAGGAAAACCCTAACTCGGTCTCCCCGCAGTCT GCTCTTCGCGTTATTGATGCATTTTCAATCCCTAAATATCGCTATCATTCGATCAAGAAGCAATTCTATCAGCATGCGGGGCGGCTTCCTATCCAAGGTG ACGCTTCAGCTAAAGCAGCTCTATACAGGGACCGGTTTCTTCTGCTTTTGCAGAGAGTGCAACGCGATCAGCACTTCTCCAAGCCTGCATTTGAATCTGA TATTTCAAACTATGGAAGTTGCGAGATAGCACCAATTCAGTCTCTTATTGGGAAGACAGGTACAAAATGGGTTATGGGTCTCATTTCCCAATTGGAGGAT GGCCATTTTTTCTTGGAGGATCTTACTGCTTCAGTACATACATGTGGATTTCCTCCCCTGGAGGATAGAGAGAAGTCACTAAAAGCACTCGGTAGACATG ATTTCTTTGGTGGTGGTACACTGGCAAAAGAAGAAGCTCTCAGGTTTGCGGAGCTGGAGAAAAGAGCGGTTAATGACATGTTTGTTGTACTATACGACAT TTGGCTAGATGATGAAGAGGTCATGAAGAAGTTGGAGACCGTGCTCGATGGTTTCGAGAGTCAAGAGGTGGTTCCTTCTTTGTTTGTCTTTATGGGGAAC TTCTGTTCAGTCCCTTGTAACCTTTCCTTCCATTCAATGAAGAGTCTCAGGGTGCAATTTGGGAAGTTAGGCCAGATGATTAGTGCTCATCCACGGCTAA AGGATCAGAGTCGTTTCCTATTCATACCCGGCCCTGATGATGCAGGCCCATCAACTGCTCTACCAAGATGCCCTTTGCCAAACTACTTGACTGAGGAGCT GCAGAACCACGTTCTGAGTGCTATATTTTCAACCAACCCATGCCGAATCAAGTTCTATACCCAAGAAATTGTGTTCTTCTGTCACGATCTTCTATATAGA ATGCGCCGGTCATGTTTGATACCGCCTTTTACAGAAGAGACTGACGATGATTTCGAGCATTTGGTTGCCACAATCACCCATCAAAGTCATCTCTGCCCTC TCCCTCTCATTGTCCAGCCAGTAATTTGGAACTACGATCACAGTCTTCATCTTTATCCATCACCACATACGATAGTATTAGGTGACAACAGTGAGCAGAA GGCATTCAAATATACCGGCATCACTTGTTTCAACCCAGGGTCCTTCTCGAGTGACAGCACTTTCGTTGCTTATCGTCCTTGTACCCAAGAGGTTGAGCTC TCAGCACTGTGA
AA sequence Show only first row Show all	>Lus10042296 pacid=23153775 polypeptide=Lus10042296 locus=Lus10042296.g ID=Lus10042296.BGIv1.0 annot-version=v1.0 MSSSGGVGSSLRKSIQKKFKIRGYALKVDALEEILSFVNRYQDAEDEALDLLLDHLLSGPRKLGVKSSIIEKELVSRAVSSLLEADEAVEENPNSVSPQS ALRVIDAFSIPKYRYHSIKKQFYQHAGRLPIQGDASAKAALYRDRFLLLLQRVQRDQHFSKPAFESDISNYGSCEIAPIQSLIGKTGTKWVMGLISQLED GHFFLEDLTASVHTCGFPPLEDREKSLKALGRHDFFGGGTLAKEEALRFAELEKRAVNDMFVVLYDIWLDDEEVMKKLETVLDGFESQEVVPSLFVFMGN FCSVPCNLSFHSMKSLRVQFGKLGQMISAHPRLKDQSRFLFIPGPDDAGPSTALPRCPLPNYLTEELQNHVLSAIFSTNPCRIKFYTQEIVFFCHDLLYR MRRSCLIPPFTEETDDDFEHLVATITHQSHLCPLPLIVQPVIWNYDHSLHLYPSPHTIVLGDNSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEL SAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	0	1
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	1.4	0.9558
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	1.4	0.9598
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	2.4	0.9449
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	3.5	0.9373
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	4.2	0.9186
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	6.3	0.9387
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	6.6	0.9400
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	7.0	0.9339
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	7.3	0.8903
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	7.5	0.9213

Compare expression of checked genes

Lus10042296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.