Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73460 1281 / 0 Protein kinase superfamily protein (.1) AT1G73450 1260 / 0 Protein kinase superfamily protein (.1) AT3G17750 1160 / 0 Protein kinase superfamily protein (.1) AT2G40120 513 / 1e-169 Protein kinase superfamily protein (.1) AT4G03175 184 / 6e-54 Protein kinase superfamily protein (.1) AT5G35980 194 / 5e-51 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G24740 171 / 6e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT1G13350 175 / 6e-45 Protein kinase superfamily protein (.1.2) AT3G53640 167 / 7e-43 Protein kinase superfamily protein (.1) AT4G32660 162 / 7e-43 AME3 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031902 [exp] 1728 / 0 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 1316 / 0 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031329 [exp] 1050 / 0 AT1G73460 645 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 523 / 6e-172 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 513 / 1e-166 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 427 / 6e-142 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 199 / 6e-52 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 198 / 1e-51 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 166 / 7e-44 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 1583 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 1557 / 0 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 536 / 2e-176 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 535 / 5e-176 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 210 / 9e-56 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 197 / 2e-51 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 171 / 6e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 172 / 1e-43 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 172 / 3e-43 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G085700 [exp] 164 / 3e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042297 pacid=23153870 polypeptide=Lus10042297 locus=Lus10042297.g ID=Lus10042297.BGIv1.0 annot-version=v1.0 ATGGCGGACACAAATTCGGTTGACGTGATCCTTGACTTCTTGCGGAGAAACCGGTTCACTAGAGCTGAGGCAGCGTTAAGGAGCGAGCTTGGCGTTCAAC CTGACCTAAATGGGTTCTTGCAGAAACTTAGTCTTGATGACAAGGAAGCGAGGGAAGTCATAGAGGAAAGGAATGTGAGTAACAAACCAGCTGCTAAATT TCAGGGCTCTGGTTCCCGAGATAGTTGTGAGGATTCTAAAGAACTTATAGTGAAAGAGATAGACTGCAGCACTCACGGAAATGGGTCTGAGGGTAGATGG AAAAGTTCTGCTTCTGCTGACGACCGTAATGTCAAACCTAATGAAACAATCGATGGCACAGACTCTGGGGATACCGTCTTAGATTTGTATTCGTGGAAGT CCATAGCTAACAACGGTCCTAATGCTTATCAGAATGATAGAGCTAATACAAGCAACTACTCTGGTAGAACAGAAGGGAAATCTAGAGAGGAGGCTACCTT CTCAGGTGTAAAGAAAACTGCATGGCAGGAAAGCAGCAGTGGTTCATCCATCCCTGATTCTAGAAATAGCAAAATTCAGACAAGTGATCCGATAGAGTTT GGTCAGCAAGTTAAAACAACTGTCTCTTATCCTGCTGACAACCCATGGTCAGTAACTGAGCAGCCAACAAGTTCTTCTGCGGACATATGGAAAAATTGTT CTGTGAAGACTGTTCTTCCGTTCTCCATTCTGGATGGATCTACTAGTTATGACACGTCATCAGATAAGAAGGAAGGGAATAAGAAAGCAGATGTGCCTGA TGTAAGGGCTGCCATTAAAGAAAAGGTAGATGAAGTTGGCAGAGCTTTGTACTTTGGGAACTCACAAGGAAGTATTGAACCGAAGAATTTAAGCTCTTCA GGGTTTACTATTGCGGCTGAGAATCATAAAGAAGACTATCCGAGACTTCCGCCCGTTAGACTAAAGTCAGAAGACAAATTATTGAATGCCAACTGGCAGG AGAAGTTTGAGCGTGATAAGCAAGGGGCAAAGCTTAGCAGTGGTGATAGTTCCTTTCTGATAGGGTCATATCTTGACGTTCCTATTGGACAGGAAATCAA CTCTTCAGTTGACGATTCAGCTGGAAAAAGAATAGCCGGAGGCAGCTGGCTGTCCGTGAGTCAGGGAATTGCAGAAGACGACCTAGTTTCTGGTTTTGCT ACAGTTGGTGATGGATTGAGTGAGTCTATTGACTATCCTAATCAATATTGGGATTCTGATGAATATGATGATGATGACGATGTCGGGTACACGAGGCAAC CTATAGAGGATGAGGCCTGGTTTCTGGCTCATGAAATTGATTATCCTAGTGACAACGAGAAGGGGACAGTAACTGGGAGCGTTCCAGACCCTCAGGAAAG GGGTCCAACAAAAGACGAGGATGATGATCAATCTTTTGCTGAGGAAGACTCGTACTTTTCTGGGGAGCGGTCTTTCCAAACAAAAAATGTTGAACCTGCT ACAGCTTCAGATGATCCTATTGGACTGTCAGTGACTGAAATTTACGGGAGAACACATGATAATGACTTGATGGCACAGTATGATGGCCAATTGTTAGATG AAGAAGAACTAAATTTGATGTGTGGTGAACCTGTGTGGCAGGGGTTTGTCACGCAAACAAATGAACTAGTCATGCTAGGAGACGGGAAAGTAAACAATGA CTCCGGGAGGACACGAATGGATGATGATCAACATGGCTCGGTTCGATCAATTGGTGTGGGTATTAACAGCGATGCTGCTGATTTTGGGAGTGAAATACAT GATAGTTTGATTGGTGGTAGCAGTGAAGGAGATCTGGAATACTTTCGTGATCATGATGTCGAGGTTAGAGGGTATAGAGCTAGTCACCAAGATTTAGACA AGAAATATGGTGATAAACAAAGCAAGGATAAAAAGAGGGCCGGCAAACATGATGCAGGGAATTTTGGGAATGAAAAAGTTGCTTCTACTCAACTGAAAGC TCTTAAAGATGGAGGGTTTTCATTTCCTCCACCATTGAGGGATAGTCAAGAGGTCCAGGCAGGGTCTAGCAAGTCTTTGTGGTCTAACAAGTCTAGCACA GTTTTGGCTAATGAAACTGGTGACATGGATCATTTGGATGCTTTGACGTTGCCTGATGACATGCTTGGTGGATTGAAGCTTAAAAGTAGTAGTTCTTCAA CTGCGAAAAGTTACATGGAAGAAAATATTGCCCATGCTATTGTTTCTGGAGACTCAACTCCCTCTACGCTTTCAAACTATGCATACAACGAAAAAGAACG TGCTAAGAAAGAGGAGGATGATAAGATTGACGACGCTGGGGAAGAACCTGGGATGTCACTTGATGATGAAGAAGCAATTGCTGTGCAAGAACAAGTGAGG CAGATCAAAGCTCAGGAGGAAGAATTTGAGACTTTCAACCTAAAGATTGTGCATCGGAAAAACAGGCATAAATGTTTCGCCTTCAGTATGGGAATTGGAT ACAAAATCTCTATCGATGCTGCTTCTTCATCAGCTGGGACTGGCTTTGAGGAGGATAAGAACTTCCATGTTGTGTTAAATTCTGTGTTAGCTGGGCGATA TCATGTTACAGAGTATCTTGGCTCAGCTGCTTTCAGTAAAGCCATTCAGGCGCATGATCTGCACACAGGCATGGATGTCTGTGTGAAAATCATAAAAAAC AACAAGGATTTCTTTGACCAGAGCCTTGATGAGATAAAACTTCTCAAATACGTGAACAAGCATGATCCAGCTGACAAGTATCACCTTCTCAGATTATACG ACTATTTCTACTACCGGGAACATTTGTTGATTGTGTGTGAACTTCTCAAAGCAAACTTATATGAATTCCATAAATTCAACAGAGAATCTGGAGGAGAAGT GTATTTCACAATGCCCAGATTGCAGTCAATTACAATTCAGTGTTTGGAAGCACTTCAATTCTTGCATGGTCTCGGCCTTATTCACTGCGATTTGAAGCCT GAAAATATACTAGTGAAAAGCTACAGTCGGTGCGAGGTGAAAGTCATCGATCTCGGAAGTAGCTGCTTCGAGACGGATCACCTCTGCTCTTACGTCCAAT CTAGATCATATCGGGCACCCGAGGTCATCCTCGGCCTTCCATATGATAAGAAGATCGACGTTTGGTCACTCGGCTGTATCTTGGCAGAGCTTTGTACTGG CAATGTCCTCTTCCAAAATGATTCACCAGCAACCCTTCTGGCCAGAGTCATCGGAATCATTGGGGCCGTTGAACAGGAAATGTTGGCTAAAGGACGAGAC ACATACAAGTATTTCACCAAAAATCACATGCTTTACGAACGGAATCAGGAGACAAACCGGCTAGAGTATTTGGTACCGAAGAAGACATCATTGAGGCACC GATTGCCGATGGGGGACCACGGATTCATTGATTTCGTCAGGCATTTGCTCGAAGTGAACCCCAACAAGCGGCCTTCTGCGGCAGAGGCTCTGAAGCACCC TTGGCTATCCTTCCCTTACGAACCAATATCTGCGTAA
AA sequence Show only first row Show all	>Lus10042297 pacid=23153870 polypeptide=Lus10042297 locus=Lus10042297.g ID=Lus10042297.BGIv1.0 annot-version=v1.0 MADTNSVDVILDFLRRNRFTRAEAALRSELGVQPDLNGFLQKLSLDDKEAREVIEERNVSNKPAAKFQGSGSRDSCEDSKELIVKEIDCSTHGNGSEGRW KSSASADDRNVKPNETIDGTDSGDTVLDLYSWKSIANNGPNAYQNDRANTSNYSGRTEGKSREEATFSGVKKTAWQESSSGSSIPDSRNSKIQTSDPIEF GQQVKTTVSYPADNPWSVTEQPTSSSADIWKNCSVKTVLPFSILDGSTSYDTSSDKKEGNKKADVPDVRAAIKEKVDEVGRALYFGNSQGSIEPKNLSSS GFTIAAENHKEDYPRLPPVRLKSEDKLLNANWQEKFERDKQGAKLSSGDSSFLIGSYLDVPIGQEINSSVDDSAGKRIAGGSWLSVSQGIAEDDLVSGFA TVGDGLSESIDYPNQYWDSDEYDDDDDVGYTRQPIEDEAWFLAHEIDYPSDNEKGTVTGSVPDPQERGPTKDEDDDQSFAEEDSYFSGERSFQTKNVEPA TASDDPIGLSVTEIYGRTHDNDLMAQYDGQLLDEEELNLMCGEPVWQGFVTQTNELVMLGDGKVNNDSGRTRMDDDQHGSVRSIGVGINSDAADFGSEIH DSLIGGSSEGDLEYFRDHDVEVRGYRASHQDLDKKYGDKQSKDKKRAGKHDAGNFGNEKVASTQLKALKDGGFSFPPPLRDSQEVQAGSSKSLWSNKSST VLANETGDMDHLDALTLPDDMLGGLKLKSSSSSTAKSYMEENIAHAIVSGDSTPSTLSNYAYNEKERAKKEEDDKIDDAGEEPGMSLDDEEAIAVQEQVR QIKAQEEEFETFNLKIVHRKNRHKCFAFSMGIGYKISIDAASSSAGTGFEEDKNFHVVLNSVLAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKN NKDFFDQSLDEIKLLKYVNKHDPADKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKP ENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGAVEQEMLAKGRD TYKYFTKNHMLYERNQETNRLEYLVPKKTSLRHRLPMGDHGFIDFVRHLLEVNPNKRPSAAEALKHPWLSFPYEPISA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	0	1
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	1.4	0.9254
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	1.7	0.9243
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	2.2	0.9164
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	7.2	0.9195
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	7.3	0.9244
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	7.4	0.9005
AT4G20720			dentin sialophosphoprotein-rel...		Lus10015137 [exp]	7.5	0.8890
AT1G50710			unknown protein		Lus10043109 [exp]	7.9	0.8864
AT1G22060			unknown protein		Lus10033461 [exp]	8.4	0.9122
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	8.5	0.9162

Compare expression of checked genes

Lus10042297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.