Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19180 558 / 0 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) AT5G42480 68 / 1e-11 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026359 [exp] 1134 / 0 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10033922 [exp] 93 / 2e-19 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 57 / 7e-08 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035900 [exp] 531 / 6e-179 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.015G028101 [exp] 515 / 7e-173 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 307 / 5e-100 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.005G235000 [exp] 75 / 9e-14 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042298 pacid=23153462 polypeptide=Lus10042298 locus=Lus10042298.g ID=Lus10042298.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCACACTTCAATCTGACGCCAATTCTTCCTTCTTCTTCCTCTTCTTCTTCTTGCTGCTGCTGTCGCTGTAAACATTTCCGCCTTCTCCGGC GCAACGCCCGTCCTACGCATCAACTTCTCGTCGATTTCGCCCTCCATCCGATCATCTCCACTCCTGCTTCCGTTTCTAGGGTTTGGAGAAGGAAAGCTTT GTACCAATGGATGCTCAACGCCGCCGCCACCACTCCCGTCATCGACAATGCCGCCGTTCCCTCCGCCGCTTCTATGGAAATTCCGGTCACCTGCTATCAG GATCTTCTAGAGGATGTGAGGGCTAAACTTCTTTTCGAAGACGAATATGCTGGAAATGTGCGGGAGAAGATCCGTCCAAAGTCTTCTCTTTACATTCCAT GGACGTGGCTACCTGGTGCTCTTTGCCTTCTTCAAGAGGTTGGCGAAGAGAAGTTAGTACTTGAAATTGGCAGAATGGTGATCAAGAAACCGGATGCTAA GCCATATATCCATGACATACTTCTCTCAATGGCAATGGCAGAATGTGCGATAGCAAAGATCGGTTTTGAGAACAATAAAGTGTCCCTTGGATTTGAAGCG CTTGCTCGTGCTCAGTGTCTACTTAGGAGTAAGACGTCTCTCGGGAAGATGGGTTTGCTGGCTGAGATAGAAGAATCCCTGGAGGAGCTTGCGCCTGCTT GCACACTGGAGATATTAGGTATGCCTCATTCTCCTGAAAATGCTGAAAGGAGACGAGGAGCAATAGCGGCATTGCGTGAGTTACTCAGACAAGGCCTTGA TGTGGAAGTATCATGTAGAGTCCAAGGCTGGCCGTGCTTCTTAAGTCAAGCTCTTAACCGGCTCAGGGCCACAGAAATAGTTGATCTTTGTCCTTGGGAT GAGTTAGCCCTTACTCGGAAAAACAAAAAATCAGTTGAATCACATACCCAAAGGGCTGTGATTGACTTCAGCTGTTTCTATGTGGCACTGATAGCTCATA TTGCTCTGGGTTTCTCTAGCAAGCAGACAAAATTGATTAATAAAGCAAAGGATATATGTGGCGCTTTGATGGCATCAGAAGGTATTGATCTAAAGTTGGA AGAAGCATTGTGCTTATTTCTTCTGGCCGAGGGTAATGAGGCGCTGGTGGTCGAAAAGCTTCAACAAGTAGAATTGAATACAAATCCAGCTCCATGGAGT TTAGCTTTGGGGAAGGAAAAGAATGATGCAAAGACTGTGAAGTTGTCTCTAGAAACATGGCTTAAGGACTCCGTGCTTGCTGCATTTTCAGATACCAGAG ATTGTTCACCATCACTGGTCAACTTTTTCTCTGGTCAGAAGAGAACTGAAAGTGATAGAAGTAAAGTACAGTATCATAAGTCCTCCAAACGGGTTGTCGC TCAAAGGCCATTTTCTGATTTCACATCGGAAACTCTGGCTGGGAAGATCGTTTTTGTTTGTGTACTGGGTTGCATTGTTTATATAACCTCAAAACTATCA ATCAGGAGTCTAAGAGGATCAACTCCGAATGTTGCCTTCAATCAGCAAATTGCTGATAGCTCGTTATCTGGAGAATGTGGCAGCATTAGTAACAGAATGA AGAAGCTGTCAGCAACAGTTAAAACACAATTTTACAAGTTTCCGCAGACTAGGACATCATCAGAGAACTCATTATCGTCTGCTAGAGCATTATCTAGGAA GCAGATGCCATTTGAAGACGCTGAAGTGCTGGTTAGACAATGGCAAACTGTTAAAGCTGAAGCACTGGGCTCTGGACATCAACTCCATATCCTTACTGAA CTGCTTGCTGAATCAATGCTTGATCAGTTTCAAGCTTTGGCTGATGCAGCTCAAGCCAAATCCTGCTATTGGAGGTTCGTTCTGCTCGACCTGTCCATCC TGAAAGCTGACATTGTCTCTGATGGATTTGGCATGGAAATGGCTGAAATTGAAGCTCTCCTTGAGGAAGTAGCGGAGCTTGTTGACGAGACAGAGCAAAA GAATCCAAACTATCACAGCAAGTATAGGGTTCACTATGTGCTGAAAAGGCAAGACGATGGATCATGGCGGTTCTGCAAAGGGGATATACAATCACCGGCT TGA
AA sequence Show only first row Show all	>Lus10042298 pacid=23153462 polypeptide=Lus10042298 locus=Lus10042298.g ID=Lus10042298.BGIv1.0 annot-version=v1.0 MAVPHFNLTPILPSSSSSSSCCCCRCKHFRLLRRNARPTHQLLVDFALHPIISTPASVSRVWRRKALYQWMLNAAATTPVIDNAAVPSAASMEIPVTCYQ DLLEDVRAKLLFEDEYAGNVREKIRPKSSLYIPWTWLPGALCLLQEVGEEKLVLEIGRMVIKKPDAKPYIHDILLSMAMAECAIAKIGFENNKVSLGFEA LARAQCLLRSKTSLGKMGLLAEIEESLEELAPACTLEILGMPHSPENAERRRGAIAALRELLRQGLDVEVSCRVQGWPCFLSQALNRLRATEIVDLCPWD ELALTRKNKKSVESHTQRAVIDFSCFYVALIAHIALGFSSKQTKLINKAKDICGALMASEGIDLKLEEALCLFLLAEGNEALVVEKLQQVELNTNPAPWS LALGKEKNDAKTVKLSLETWLKDSVLAAFSDTRDCSPSLVNFFSGQKRTESDRSKVQYHKSSKRVVAQRPFSDFTSETLAGKIVFVCVLGCIVYITSKLS IRSLRGSTPNVAFNQQIADSSLSGECGSISNRMKKLSATVKTQFYKFPQTRTSSENSLSSARALSRKQMPFEDAEVLVRQWQTVKAEALGSGHQLHILTE LLAESMLDQFQALADAAQAKSCYWRFVLLDLSILKADIVSDGFGMEMAEIEALLEEVAELVDETEQKNPNYHSKYRVHYVLKRQDDGSWRFCKGDIQSPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	2.2	0.9210
AT4G24880			unknown protein		Lus10007295 [exp]	2.8	0.8829
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	4.0	0.8684
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	5.5	0.8745
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	7.2	0.9056
AT1G50710			unknown protein		Lus10043109 [exp]	9.4	0.8736
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	10.4	0.8881
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	11.2	0.8842
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	11.8	0.8909
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	14.5	0.8895

Compare expression of checked genes

Lus10042298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.