Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026358 [exp] 175 / 1e-53 ND 42 / 6e-05 Lus10042300 [exp] 108 / 4e-29 ND 35 / 0.008 Lus10028788 [exp] 62 / 5e-12 ND / Lus10017966 [exp] 54 / 5e-10 ND / Lus10006666 [exp] 44 / 9e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114800 [exp] 44 / 7e-06 ND / Potri.009G114701 [exp] 40 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10042299 pacid=23153998 polypeptide=Lus10042299 locus=Lus10042299.g ID=Lus10042299.BGIv1.0 annot-version=v1.0 ATGCCACAACCTCAAATTTCGAGCTATGATGACAACGGTATCAAGCTAAGCAAGGTTGAAGAAGGTACTTATGGGAGATTCGCCAGAGACATCGAGTCAC AACCTCAAATCTCCAACTACGACGATGATGCTATACCGAATAAATTTGCAAAGGATTTGAGGTCGCAACCTCAAATTTCCAACTATGGAGAAAAGATGCA AAACAAATTCGTAAAGGACATCATGCCACAACCTCAGATCTCAAGCTATGACGAGAATGGCGTTGTAGGAAGCAAGAAAGATGACCTCGCCCAAGAATTA GTCAACGCTGTGGAGCAGATAGCCATGTTTGGTCGTAAGGCCAGTTATCCTCCTCCACAGGATTTTGCTGTGTTCTCTGCGCTGGAAGGTCATTTCCATG GGGCCTTCACTCTTCAGGCTGCTGTCTAG
AA sequence Show only first row Show all	>Lus10042299 pacid=23153998 polypeptide=Lus10042299 locus=Lus10042299.g ID=Lus10042299.BGIv1.0 annot-version=v1.0 MPQPQISSYDDNGIKLSKVEEGTYGRFARDIESQPQISNYDDDAIPNKFAKDLRSQPQISNYGEKMQNKFVKDIMPQPQISSYDENGVVGSKKDDLAQEL VNAVEQIAMFGRKASYPPPQDFAVFSALEGHFHGAFTLQAAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042299 [exp]	0	1
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	1.0	0.8566
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	1.4	0.8524
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	2.2	0.8227
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10002836 [exp]	3.5	0.8452
AT5G66440			unknown protein		Lus10014287 [exp]	5.9	0.8035
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	15.2	0.8227
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	22.1	0.7626
AT4G33800			unknown protein		Lus10006135 [exp]	26.0	0.8109
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017870 [exp]	30.7	0.7890
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	36.5	0.7802

Compare expression of checked genes

Lus10042299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.