Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026358 [exp] 480 / 2e-170 ND 42 / 6e-05 Lus10028788 [exp] 134 / 8e-37 ND / Lus10042299 [exp] 108 / 8e-29 ND / Lus10007012 [exp] 104 / 7e-26 ND / Lus10007009 [exp] 91 / 1e-20 ND / Lus10006666 [exp] 66 / 1e-12 ND / Lus10017966 [exp] 49 / 2e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114701 [exp] 88 / 4e-20 ND / Potri.009G114800 [exp] 71 / 2e-14 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10042300 pacid=23153652 polypeptide=Lus10042300 locus=Lus10042300.g ID=Lus10042300.BGIv1.0 annot-version=v1.0 ATGGCATCTCAGTTGGCTGCTTTCTTAACTACTCTCGCCCTACTCTTCCTGGTAGCTGGCAACTGCAGTAATGCGAGGAAAGATCGAGCCGGGGAGTACT GGGGAGCCGTGATGAAAGACCAGCCTTTTCCTGAAGCTATCGAATCCCTGATAGTAGTCGAGGAGCCCACCGTACTACCATCGAACTCCGACCACACCGG AGTTCATTGTGATGCCGAGGAGGCAGGGGATGCTGATCACAAATCTATCAGTACTAAAAGCCATGAGATGAAATTCACAAGAGATGTTCTGCCACAACCT CAAATCTCTAGCTATGATGATGATGATGCTACATTAAAAAAGTTGGTGAAGGATATCGAGTCGCAACCTCAAATCTCTAGCTACGGAGTTAATCATGCAT CTAGTAAGTTTGTGAGAGATGTCATGCCACAACCTCAAATTTCGAGTTATGATGGCAACGGTGTCGAGCGGAGCAAGGTTGAACAAGGTATCAGGCATCA ACTGAGAGGTACTGATACAGGGAGATTCGTTAGAGTTGTCCGGTCACAACCTCAAATCTCTAATTATGGTGGTGATGCTACATTAAATAAGTTTGTGAAG GACGTAAAGTCGCAACCTCAGATCTCTAGCTATGATGGTGACGCTACATCAAAGAAGTTCGTGAAGGACTTCAAGTCGCAGCCTCAAATCTCTAGGTACG GACCCGAGCACAAATTCATGAATGATATCATGCCGCAACCTCAAATTTCGAGCTACGATGACAATGGTATCAAGCTAAGCATGGTTGAAGAAGGTACCGG GAGATTCGCCAGAGACATCGAGTCACAACCTCAGATCTCCAGTTATGATGATGATACTACGTCAAAAAACTTTGTGAATGTTGAGAAACCACGGGACCGT AGTCCAAGCAACAACTCCACTATACTTTGGTGGGATTACAAGTCTTCTCTAGGATAG
AA sequence Show only first row Show all	>Lus10042300 pacid=23153652 polypeptide=Lus10042300 locus=Lus10042300.g ID=Lus10042300.BGIv1.0 annot-version=v1.0 MASQLAAFLTTLALLFLVAGNCSNARKDRAGEYWGAVMKDQPFPEAIESLIVVEEPTVLPSNSDHTGVHCDAEEAGDADHKSISTKSHEMKFTRDVLPQP QISSYDDDDATLKKLVKDIESQPQISSYGVNHASSKFVRDVMPQPQISSYDGNGVERSKVEQGIRHQLRGTDTGRFVRVVRSQPQISNYGGDATLNKFVK DVKSQPQISSYDGDATSKKFVKDFKSQPQISRYGPEHKFMNDIMPQPQISSYDDNGIKLSMVEEGTGRFARDIESQPQISSYDDDTTSKNFVNVEKPRDR SPSNNSTILWWDYKSSLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042300 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	1.7	0.9329
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	3.5	0.9303
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	4.6	0.9109
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	9.6	0.9093
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	9.7	0.8661
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	11.0	0.8854
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041160 [exp]	11.8	0.8223
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	13.3	0.8724
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	13.6	0.9030
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	15.4	0.8998

Compare expression of checked genes

Lus10042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.