Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 811 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 766 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 584 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 551 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 538 / 0 ATSFH12 SEC14-like 12 (.1) AT2G21540 535 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT2G18180 527 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 520 / 9e-179 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 499 / 9e-171 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 450 / 7e-152 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026356 [exp] 1091 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 948 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 939 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 525 / 8e-180 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10025988 [exp] 521 / 1e-178 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 510 / 1e-174 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10041779 [exp] 498 / 2e-170 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 496 / 3e-169 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10024276 [exp] 485 / 4e-164 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 857 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 846 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 691 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 664 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 585 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 569 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 562 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 551 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G243000 [exp] 416 / 3e-137 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G471300 [exp] 396 / 8e-130 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10042302 pacid=23153662 polypeptide=Lus10042302 locus=Lus10042302.g ID=Lus10042302.BGIv1.0 annot-version=v1.0 ATGTCTGGTCCGCTCGATCGGTTCGCAAGGCCTTGTAAGTCATTTGCTTCTCCGCTTCCTCTTGCTATTATGGCTCTTTTGGCTTGCTTATGGTCCAGAA GTTATGGCTTTGAGGGGTTTTCAGGCGGAGATGAAAGCAGAGAAGAGAGGAGAGAGAGGCGAGAGAGGAAATCTGATTTTGAGAACTCTGAGGATGAAAG GAGAACGAGGATTGGCTCACTGAAGAAGAAGGCCCTTAATGCGTCTACCAAGTTCAAGCATTCGCTTAAGAAAAAAAGTAGTAGACGGAAGAGTGCTGAT GGCAGGATTAGTTCTGTTTCCATTGAAGATGTGCGCGACCTTGAGGAAATGCAGGCTGTCGATGCATTTCGTCAGTCGCTGATCATGGATGAATTGCTTC CTGAAAGACATGACGATTATTACATGATGTTAAGATTCTTGAAAGCCAGAAAATTTGATGTTGAGAAAGCAAAGCACATGTGGGCTGATATGATTCAATG GAGGAAAGAATTTGGAACGGATACTATCACAGAGGAGTTTGAGTTTCCAGAACAAAATGAAGTTTTGAAATATTACCCTAATTTCTATCATGGCGTGGAC AAAGAAGGGAGACCTGTCTATATGGAAAGATTGGGAAAAGTTGATCCACACAAGCTAATGCAAGTTACAGACATTGACCGCTATGTAAAATACCATGTGC GTGAATTTGAGAAAAGCTTTCTGGTCAAGTTTCCTGCTTGCAGTATTGCTGCAAAGAGGCATATAGATTCAAGCACAACAATTTTAGATGTTCAAGGAGT GGGACTAAAGAACTTTACCAAGTCAGCTCGGGAACTAGTTATGCGGCTGCAGAAAATTGATGGTGACAATTACCCTGAGACTCTGCATGAAATGTATATC ATCAATGCTGGTCCTGGATTTAGGCTTTTGTGGAATACCATAAAGTCATTTCTAGATCCTAGAACGACCTCAAAGATCCATGTTATTGGAAACAAGTACC AGAGTAAATTGCTTGAGGTGATTGATGCCAGTGAATTGCCGGAATTTATGGGTGGTAGTTGTACATGTGCTGATCAGGGAGGTTGTCTTCGCTCTGATAA AGGACCATGGAGGAATCAAGATATATTGAAGATGGTTCTTGATGGTGGAGCACGACGCTCTAGGCAAGTTGTAAAAATTCTAAACAACGAGGGTAAGGTC ATTACCTATGCAAAGCCTCCCTATTACCCAATGGTGAAAGGAAGTGACTCTTCTGCTGCTGAGTCTGGGTCAGAAGCTGAAGATATTTCTTCCCCCAAGG CACTTAAGGCCTACTCACAGCTGCGCTTGACTCCTGTCCGTGAAGAAGCAAAGATAATGGGCAAGGCAAATCATCCTAGTAGCTTTCCTGGGTTTGATGA ATACATTCCCATCGTTGACAAAGCAGTTGACTCTACTTGGAGTGAGCAAGCAGTTTTGAAGAAGCTCGAAGTTTCCAAAGCAACTGTTCCGCAGGCTCCA AAGACTTCAGAAGCTATCCATGTTCGTATTTGGTTAGCAGTTCTTGCTCTGTTCATGACGCTTGTAAATCTTGTCCAGTCACTGCCATCCCGTATGAACA AGACGTGTTTGGAGGTGATGCCAGACAACAATGGAGCTTCAGCTGGATTTGCTGTTGAGTCAGCAGAGGAGTTGAATCGCCCACCTTCGCCAGCTCCTGG TTACACGGATGCTGACCTCCTTCTGACTTGTGTGTTGAAAAGGCTAAGTGAAGTCGAGGAGAAAGTAGACACACTTCAAGCAAAGCCACTAAAGATGCCT TACGAGAAGGAGGAGTTGCTGAATGCTGCTGTTTGCCGTGTGGATGGGTTGGAAGCTGAACTTATTGCCACTAAAAAGGCTCTGCATGAAGCTCTGATGA GACAAGAAGAACTTCTTGCTTACATCGACAGTCAAGAAGATGCGAAATATCGGAAGAAGAAGAAGAAGCTGTTCTGCTATTGA
AA sequence Show only first row Show all	>Lus10042302 pacid=23153662 polypeptide=Lus10042302 locus=Lus10042302.g ID=Lus10042302.BGIv1.0 annot-version=v1.0 MSGPLDRFARPCKSFASPLPLAIMALLACLWSRSYGFEGFSGGDESREERRERRERKSDFENSEDERRTRIGSLKKKALNASTKFKHSLKKKSSRRKSAD GRISSVSIEDVRDLEEMQAVDAFRQSLIMDELLPERHDDYYMMLRFLKARKFDVEKAKHMWADMIQWRKEFGTDTITEEFEFPEQNEVLKYYPNFYHGVD KEGRPVYMERLGKVDPHKLMQVTDIDRYVKYHVREFEKSFLVKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELVMRLQKIDGDNYPETLHEMYI INAGPGFRLLWNTIKSFLDPRTTSKIHVIGNKYQSKLLEVIDASELPEFMGGSCTCADQGGCLRSDKGPWRNQDILKMVLDGGARRSRQVVKILNNEGKV ITYAKPPYYPMVKGSDSSAAESGSEAEDISSPKALKAYSQLRLTPVREEAKIMGKANHPSSFPGFDEYIPIVDKAVDSTWSEQAVLKKLEVSKATVPQAP KTSEAIHVRIWLAVLALFMTLVNLVQSLPSRMNKTCLEVMPDNNGASAGFAVESAEELNRPPSPAPGYTDADLLLTCVLKRLSEVEEKVDTLQAKPLKMP YEKEELLNAAVCRVDGLEAELIATKKALHEALMRQEELLAYIDSQEDAKYRKKKKKLFCY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	0	1
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	2.6	0.9306
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	3.0	0.9433
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	5.7	0.9429
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	10.1	0.9313
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	10.4	0.9397
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	11.8	0.8978
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	12.4	0.9214
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	16.1	0.9084
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	16.2	0.9382
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	16.3	0.9361

Compare expression of checked genes

Lus10042302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.