Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39415 59 / 1e-11 F-box family protein (.1) AT1G49610 59 / 2e-10 F-box family protein (.1) AT2G04230 58 / 4e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G02910 56 / 1e-09 F-box/RNI-like superfamily protein (.1.2) AT2G26030 56 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT1G67390 56 / 1e-09 F-box family protein (.1) AT4G00160 56 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 56 / 2e-09 RNI-like superfamily protein (.1) AT5G02920 55 / 2e-09 F-box/RNI-like superfamily protein (.1) AT3G49030 55 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006513 [exp] 93 / 1e-22 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 92 / 2e-22 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 86 / 2e-21 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006970 [exp] 88 / 8e-21 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10027244 [exp] 88 / 9e-21 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10042550 [exp] 87 / 1e-20 AT5G53840 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020292 [exp] 87 / 2e-20 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10042331 [exp] 84 / 2e-20 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1) Lus10038967 [exp] 87 / 4e-20 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 66 / 8e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 62 / 9e-12 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 60 / 5e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002001 [exp] 57 / 4e-10 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G098700 [exp] 57 / 6e-10 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 57 / 6e-10 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104100 [exp] 57 / 7e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 55 / 3e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 55 / 4e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 54 / 8e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042304 pacid=23153814 polypeptide=Lus10042304 locus=Lus10042304.g ID=Lus10042304.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGGAAGTTTGAAGATCAAAGTGGGGAAACATGTTTCTATGGAAGAAATTGATAGACTGAGCAGTCTTCCGGACGATATACTGCATCACA TTCTCTCGTTCCTTGACACAACATCCATGGTTAAGACCAGCTTCCTTTCTAGGAGGTGGAAGTGCTTATGGAAAGATGTTCCCGTCCTCTATTTCCAGAT ACCTTACACGTCAAAGTTTGATTTCAATGAATATGTAGCCAAGATTCTGTCTCTCCGATCTCAACATATAACTGTGGAGAAGGTTAAGTTCGATGATCTT GGTCTAGTACTTTGGTTAGATCCAGAAACGTTTGCTAGAGTCATGCAATATGCTGGCCCCAAGGGAATGGTGGTCATCTTCATCATTTGTCCATCAAGAC TGGATATGGCCGACTTGCTGAATTCAGCTCCTTGGCGGACTCAATTATTGCTAATCGTCACCATCAATATCTTAGGACTCTTGAGCTGTGGGGCTTTATA CTACCCTCCCTTATGA
AA sequence Show only first row Show all	>Lus10042304 pacid=23153814 polypeptide=Lus10042304 locus=Lus10042304.g ID=Lus10042304.BGIv1.0 annot-version=v1.0 MAAAGSLKIKVGKHVSMEEIDRLSSLPDDILHHILSFLDTTSMVKTSFLSRRWKCLWKDVPVLYFQIPYTSKFDFNEYVAKILSLRSQHITVEKVKFDDL GLVLWLDPETFARVMQYAGPKGMVVIFIICPSRLDMADLLNSAPWRTQLLLIVTINILGLLSCGALYYPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	0	1
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	3.5	0.9506
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	4.0	0.9520
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10042466 [exp]	4.2	0.9474
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	8.1	0.9162
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	9.7	0.9447
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	10.2	0.9462
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	10.2	0.9403
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	10.6	0.9381
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	12.7	0.9377
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	17.1	0.9442

Compare expression of checked genes

Lus10042304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.