Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14390 804 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT5G11880 802 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT4G34710 46 / 6e-05 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040433 [exp] 865 / 0 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10023548 [exp] 857 / 0 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10026354 [exp] 223 / 8e-72 AT5G11880 210 / 2e-67 Pyridoxal-dependent decarboxylase family protein (.1) Lus10004154 [exp] 57 / 1e-08 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1) Lus10005629 [exp] 42 / 0.0004 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119300 [exp] 836 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G157500 [exp] 818 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.005G246300 [exp] 69 / 2e-12 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 59 / 3e-09 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G163300 [exp] 45 / 0.0002 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain CL0036 [flax] [poplar] PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Representative CDS sequence Show only first row Show all	>Lus10042305 pacid=23153486 polypeptide=Lus10042305 locus=Lus10042305.g ID=Lus10042305.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTAGTCGCCTCTCCCAGCCGCCGGCTCTCTCAAACACTCCAACTCACTCTTTTCCTCGCTACCCATTCCCCAAATTCTCTTCTTTACCAT TTAAATTCACCACAAACCGATCCCTTGTACTCCGGGTGGTTCTTCCTCAAAACCCTACCAAAACCTCCAATCAGTTTGAGCATTGTTTCACCAAATCCTC CGATGGCTTCCTCTACTGTGAGAACGTCAAGGTCCAGGATGTCATGGAAGGGGTTGAGAGGAGGCCGTTCTATTTGTACAGTAAGCCTCAGATTACCAGG AATGTGGAGGCATACAAGGATGCCTTGAAGGGATTGAACTCTGTTATTGGCTATGCTATAAAAGCCAATAATAACTTGAAGATTTTGGCGCATTTGAGGA AGTTGGGCTGTGGTGCTGTTCTCGTTAGTGGGAATGAGCTCAGATTGGCTCTCAGAGCTGGGTTTGATCCCACAAAGTGTATATTTAATGGAAATGGGAA ACTTTTGGAGGATTTGGTTTTGGCTGCGCAAGAAGGTGTCTTTGTTAACGTAGATAGTGAATTTGATTTGGAGAACATTGTAGAAGCTTCTAGGATTGCC GGAAAGAAGGTCAATGTTTTGCTTCGAATCAACCCTGATGTTGATCCTCAGGTCCATCCGTATGTTGCTACTGGGAACAAGAACTCAAAGTTTGGTATTA GAAATGAGAAACTGCAATGGTTTCTGGATGCTGTAAAGGCACACCCGAATGAGCTAAAGCTTGTTGGCGCCCATTGCCATCTTGGGTCAACTATAACCAA GGTGGACATATTTAGGGATGCTGCAAGTCTTATGGTTAACTACATTGATGAAATTCGTGGTCAAGGCTTTGAAGTTGATTACCTCAACATTGGAGGTGGT TTGGGCATAGATTACTATCACTCTGGTGCTGTCCTACCCAAGCCAAGGGATCTTATAAACACTGTTCGTGAATTGGTGCTCTCGCGGAATCTCAATCTCA TCATTGAGCCAGGGAGGTCCCTTATTGCCAACACCTGCTGCCTCGTAAATAGGGTTACTGGCGTCAAGACTAATGGAACCAAAAATTTCGTCGTAATAGA TGGCAGCATGGCAGAGCTCATCCGTCCTAGTCTCTATGATGCTTATCAACACATAGAACTCGTGTCTCCCTCGCCGCCAAATGCTGAGGTGCAAACCTTC GATGTGGTGGGTCCTGTGTGCGAGTCTGCCGATTTTCTGGGGAAGGAGAGAGAACTTCCTACTCCAGCCAAGGGAGATGGTCTGGTTGTTCATGATGCGG GAGCTTACTGCATGAGCATGGCATCAACATATAATCTGAAGATGCGCCCTCCAGAGTACTGGGTGGAGGAAGATGGATCAGTAGCCAAGATCAGGAATGC GGAGACATTTGAAGACCATATTCGATTTTTTGATGGCCTATAA
AA sequence Show only first row Show all	>Lus10042305 pacid=23153486 polypeptide=Lus10042305 locus=Lus10042305.g ID=Lus10042305.BGIv1.0 annot-version=v1.0 MASSSRLSQPPALSNTPTHSFPRYPFPKFSSLPFKFTTNRSLVLRVVLPQNPTKTSNQFEHCFTKSSDGFLYCENVKVQDVMEGVERRPFYLYSKPQITR NVEAYKDALKGLNSVIGYAIKANNNLKILAHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVEASRIA GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAASLMVNYIDEIRGQGFEVDYLNIGGG LGIDYYHSGAVLPKPRDLINTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPSPPNAEVQTF DVVGPVCESADFLGKERELPTPAKGDGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRNAETFEDHIRFFDGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	0	1
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	2.2	0.9599
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	4.5	0.9573
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	6.0	0.9473
AT1G69070			unknown protein		Lus10019174 [exp]	7.1	0.9476
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10016901 [exp]	8.0	0.9220
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	8.7	0.9463
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	8.8	0.9419
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	8.8	0.9400
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	12.5	0.9378
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	13.2	0.9453

Compare expression of checked genes

Lus10042305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.