Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34560 60 / 8e-11 unknown protein AT5G66440 50 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026353 [exp] 284 / 2e-97 AT4G34560 101 / 2e-26 unknown protein Lus10040435 [exp] 171 / 4e-53 AT5G66440 104 / 3e-27 unknown protein Lus10023551 [exp] 171 / 7e-53 AT5G66440 95 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157300 [exp] 116 / 8e-32 AT4G34560 107 / 9e-29 unknown protein Potri.009G119000 [exp] 108 / 5e-29 AT4G34560 90 / 8e-22 unknown protein Potri.005G120300 [exp] 66 / 2e-12 AT5G66440 134 / 4e-38 unknown protein Potri.007G021500 [exp] 46 / 7e-06 AT5G66440 147 / 6e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042306 pacid=23154016 polypeptide=Lus10042306 locus=Lus10042306.g ID=Lus10042306.BGIv1.0 annot-version=v1.0 ATGGACTCTTTGAACGCCAATAATCTGAAGACCCTGAAAGCAAAGGCGGTCAAGAAGCACAAGAAATTCCAGAAGATCACCAAACTGTTGAGAGCGCTGG AAATCATGGTATTCCTGGCCGTGGTCTCGAGCTGTTCGATTCAACTCCTTCCGGCCGCTTTTAAGAGCTCCGTGGAGTATTTCAAGGACTTCTTAGTCGT CCTCGCCAGCCCCAGGTTTGTGTTCGTGGTAGGGAATGCCATCGTGGTAGTTCTCTTCATCAAGTCCGGTCAGCTCTCCCGCAGCAGCCAAGAAGAAGAA GGAGGAAAAGGAAGCATCAGCGCAAGATCAGATATTTACGAGGAATTTGTGGAGATGAGCGGAAATAGCGGTCAGCAGGCGTTTGCTTCGGTTCAGAGAG TTGAAGAAGTGAAAAGCAGAAGAAAACAGAGTGATAGCTTGGTGGTCAAGAAAGAAGAGCATCATCCTGTTTCGTCAAGAGTCGTAAAGAGTTACGAGAG GAGCAAGTCAGATAAGTTGGTTATTAGCAGGAAGCCGGAAAAGGAACTGAGGCGGTCTGCAACGGAGAAATTGAGCAAAAAGAAGGATTTGTTTCCAGAG GACGACATGAGCAACGAGGAGTTCAAGAGTGCAGTGGATGCCTTCATTGAAAGGCAAAAGAGGTTTCGAAAAGATGAACAAGAGGTTTCTGTATCTGTGG CCTGA
AA sequence Show only first row Show all	>Lus10042306 pacid=23154016 polypeptide=Lus10042306 locus=Lus10042306.g ID=Lus10042306.BGIv1.0 annot-version=v1.0 MDSLNANNLKTLKAKAVKKHKKFQKITKLLRALEIMVFLAVVSSCSIQLLPAAFKSSVEYFKDFLVVLASPRFVFVVGNAIVVVLFIKSGQLSRSSQEEE GGKGSISARSDIYEEFVEMSGNSGQQAFASVQRVEEVKSRRKQSDSLVVKKEEHHPVSSRVVKSYERSKSDKLVISRKPEKELRRSATEKLSKKKDLFPE DDMSNEEFKSAVDAFIERQKRFRKDEQEVSVSVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66440			unknown protein		Lus10042306 [exp]	0	1
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	2.0	0.9248
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	3.2	0.9122
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	3.9	0.8945
					Lus10040811 [exp]	4.5	0.9190
AT4G34560			unknown protein		Lus10026353 [exp]	5.1	0.8830
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	5.3	0.9124
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	6.7	0.9038
AT3G16330			unknown protein		Lus10038274 [exp]	7.1	0.9188
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	8.2	0.8919
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	9.6	0.8803

Compare expression of checked genes

Lus10042306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.