Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74900 539 / 0 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 206 / 5e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 197 / 8e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 192 / 6e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 191 / 6e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 187 / 1e-52 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65820 185 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 182 / 3e-51 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G15010 182 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16640 181 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001633 [exp] 214 / 2e-62 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 209 / 8e-60 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042362 [exp] 186 / 3e-52 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015827 [exp] 182 / 4e-51 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10011566 [exp] 184 / 7e-51 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 181 / 5e-50 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 180 / 1e-49 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 177 / 3e-49 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 174 / 7e-48 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070200 [exp] 704 / 0 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 219 / 3e-65 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 201 / 2e-57 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G114700 [exp] 197 / 2e-56 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 197 / 1e-55 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 196 / 2e-55 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 195 / 4e-55 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 194 / 1e-54 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 194 / 1e-54 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G084000 [exp] 192 / 2e-54 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042307 pacid=23153646 polypeptide=Lus10042307 locus=Lus10042307.g ID=Lus10042307.BGIv1.0 annot-version=v1.0 ATGCTTATTCGGTTCGCCGCCGCGAACCACCGCCGCGCCTGGATTCTCCCCAGTCGTCTTCCTTCATCGGGAAACTTCGCCACCCTCACCGACGATCAGC AGCCTTCAAGGAATCATATTCCCTTGAGTTCCCTGATTCTTAGCCCATCAGACCCGCGCAACAAAGCCCAAACGCCAGCCGCCGTCCCAGCTCCGGCAGC TGATGTCGCTTCTCTGACTTCCCTAATCCTCAATTCGTCGAACAAACAAACCTTAGCCCAAAGCCTCCACTCTCCAACCATTCAATGGTGCCCGGAGCTT GTGAACTCCGTCATCAAACACCTCTGGAACCACGGCCCCAAAGCTCTAGAATTCTTCCACTTGCTTACATACCACCCTTCCTACATGCACCACCCTTCTT CATACGACCACGCCATCGACATCTCCGCTCGCCTCCGGGATTTCCGGACCCTATGGACTCTTGTCTCCCGGATGCGGAAAGCAAAGATTGGCCCTTCCCA CAAAACCTACGCCATTATTGCTGAGAGGTATGCTTCTGCAAAAAGACCTCATAAGGCTGTGGATATCTTCTTGACTATGAATGATTACGGGTGGTTCCCT GATCTGAAATCTTTTAATGTGCTTCTTGATGTGCTGTGCAAGTCGAAACATGTGGAAATGGCTTATAATCTGTTCAAGGCATTAAGAGGGAAGTTCAAAG CTGATTGTGTTAGCTACAATATAATTGTGAATGGTTGGTGTTTGATAAAGAGGACTGGGAAAGCGTTGGAGGTGATGAAGGAGATGGTGGATCGAGGGGT AAGTCCGAATTTGACCACTTATAATACACTGGTTAGAGGCTATTTTAGAGCTGCTCAGATTGAGGAAGGTTGCAGGTTCTTCTCAGAAATGAAGAAGAGG AAATGGGAGGTTGATGTTGTTACTTACACTACTGTGATCCATGGGCTCGGTGTTGCAGGGGAGATTAACCGGTCTCGGAATGTTTTTAATTGCATGGTGA AGGAAGGAGTTCTTCCTTCTGTGGAAACTTACAATGCGTTCATTCAGGTTTTGTGCAAGAAGGATAGTGTAGCGAATGCTTTGTTGGTTTTCGAAGAGAT GGTGAGGAAAGGTTATGTACCGAACACGACAACTTATGCCGTGGTGATTAGAGGGTTGTGCCACGCTGGCGAATTTGACAAGGCGATGCAGTTCTTGGGG AAAATGAAAGATGGTAGTAGTAGTTGTGGCCCGAATTTGCAGACCTGCAATGTCATGATCCGCTACTTATGTGAGGCTGGGGAAATCGAGAAGGGGTTGA GCTTGTTTCGTGAAATGAGCAGTGGAGATTGCTTGCCGAATTTGGATACCTACAACATCTTGATAAGTGCAATGTTTGTGAGGAAGAAATCTGATGATCT GTTGCTTGCTGGGAGGTTGTTGATGGAGATGGTTGATCGAGGATTTGTACCTAGAAGATTTACTTTCAATCGGATTCTTAATGGGCTCTCGTTAACTGGT AATCATGAATTTGCAAGGGAGATTCTAAGATTCCAAAGTAAATGTGGGTGTGTGCCCCGTAAAGTGAAATTATGA
AA sequence Show only first row Show all	>Lus10042307 pacid=23153646 polypeptide=Lus10042307 locus=Lus10042307.g ID=Lus10042307.BGIv1.0 annot-version=v1.0 MLIRFAAANHRRAWILPSRLPSSGNFATLTDDQQPSRNHIPLSSLILSPSDPRNKAQTPAAVPAPAADVASLTSLILNSSNKQTLAQSLHSPTIQWCPEL VNSVIKHLWNHGPKALEFFHLLTYHPSYMHHPSSYDHAIDISARLRDFRTLWTLVSRMRKAKIGPSHKTYAIIAERYASAKRPHKAVDIFLTMNDYGWFP DLKSFNVLLDVLCKSKHVEMAYNLFKALRGKFKADCVSYNIIVNGWCLIKRTGKALEVMKEMVDRGVSPNLTTYNTLVRGYFRAAQIEEGCRFFSEMKKR KWEVDVVTYTTVIHGLGVAGEINRSRNVFNCMVKEGVLPSVETYNAFIQVLCKKDSVANALLVFEEMVRKGYVPNTTTYAVVIRGLCHAGEFDKAMQFLG KMKDGSSSCGPNLQTCNVMIRYLCEAGEIEKGLSLFREMSSGDCLPNLDTYNILISAMFVRKKSDDLLLAGRLLMEMVDRGFVPRRFTFNRILNGLSLTG NHEFAREILRFQSKCGCVPRKVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	0	1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	4.0	0.7822
AT3G51650			unknown protein		Lus10009100 [exp]	4.2	0.7870
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	4.6	0.7451
AT3G51650			unknown protein		Lus10009097 [exp]	4.6	0.7905
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	5.7	0.7691
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	7.7	0.7641
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	8.0	0.7596
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	9.5	0.7802
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	9.9	0.7713
AT1G31240			Bromodomain transcription fact...		Lus10018295 [exp]	10.1	0.7294

Compare expression of checked genes

Lus10042307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.