Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 120 / 5e-30 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 94 / 1e-20 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026352 [exp] 736 / 0 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10022458 [exp] 101 / 4e-23 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10016763 [exp] 100 / 6e-23 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10013265 [exp] 77 / 6e-15 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 66 / 3e-11 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118700 [exp] 449 / 3e-156 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.015G094700 [exp] 123 / 5e-31 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.012G097000 [exp] 120 / 7e-30 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 77 / 4e-15 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10042308 pacid=23153567 polypeptide=Lus10042308 locus=Lus10042308.g ID=Lus10042308.BGIv1.0 annot-version=v1.0 ATGGAAGTTGGAGGAGGAGAAGATGATGGAATGAAGAAGCCGGATATTCTGGATTCAAACTTCATGACAGATCTTAAACAACAACAACAACTACAAACAA CCCACACACAAAAGCAGCTCGATTCAGGGGCTGCCCTTCAAGCATTTCTCGATCACATTCCCATCAATGCCATCCCTGGCATTCAAAACTCTTCTTCTGT TATGGAGGTGAAAGCTGGAGAGGCGGTGGAACAAGCAATAGAGATGCTATACAAGAAGAACGTGTCCGGCGCTCCAATTGCAGACTTAATCGACTCTGAG AGCGTGAGCGGGAGGGTTTCAGATCGATACATGGGTTTCATTGATTTCGCCAGGATGCTTCTTTGGTGTTTCCACAAATGTGATTATAACCCTCAAAATA ATCACACCACCACCAATGTTCACGACAGCTTTTTCGCAATGCTCCACCACAATCCTGACATTGCAGAAACAAAGGTGGGAGAGTTGGCAAAGTCGTTTCT ATGGGATCCATTTTTCCCAGTTCATCTGGAAGATACCTTGTTCCATGTGCTGCTGCTTTTCTGCAAGCATCAGCTCCAAGTAGTTCCTGTGGTGGTGAAA TCCGAGCTTCAAAATGCAGTGATTCAGTTGCTGCTTCAATCGGCCGGACTTGAATGGTTCGATGCCATTGCTGACAAGCCTTTATCAGAATACCGAGAGG AGCATCTTATAACTGTTTGCGGAGAGCAGAGCTTATCAGAAGCTCTTCACCGACTATGGGAAAGCCAAATCGGTGTCGTAGCAGTCGTAAGCCGAGGGAA TGGGAGTGTTATAGGCTGCATCAGGAACAGTGATGCTTATCTCCTTGTCGAGAATAACAACTTATTCAGCAACAGGAAGACCATAACAGCAGAGGAATTC ATTCACACGGAGCCAGCAGCAGATGGTGATGATCCGATCATCGAGCGAGACCTCGGAGCGCTCCTTTCGGCAGGGACTCTCAAATTGAAGAACGCATTTC TTCCGAAGATGGATTCGGTAGTCACCAACAAAAGGAGCGACACGTTGAAGCATGCCATGGTGGAGATGGCAAGGACAAACAGCAGCTTCAGCTTCCTGGT CGATGGGTCTAATAATCGGCCCACTGGGGTCCTCACTTTGCGAGATGTGATCGTTCAGTTTGCTCCACCGTGTATGGATTCCAGCTTCCAAGGAGGTGGG TTCTTCGATTTTGCACTGGAACAAGCGGGTTGCCATGAGAAGAATGGGACTGTTGTGTGTAATCGACAAGCTTCGTCTTCTGTTAGACTTGTAAAAGCAA CTGATGCTGCTGCATCTTCTAACTAG
AA sequence Show only first row Show all	>Lus10042308 pacid=23153567 polypeptide=Lus10042308 locus=Lus10042308.g ID=Lus10042308.BGIv1.0 annot-version=v1.0 MEVGGGEDDGMKKPDILDSNFMTDLKQQQQLQTTHTQKQLDSGAALQAFLDHIPINAIPGIQNSSSVMEVKAGEAVEQAIEMLYKKNVSGAPIADLIDSE SVSGRVSDRYMGFIDFARMLLWCFHKCDYNPQNNHTTTNVHDSFFAMLHHNPDIAETKVGELAKSFLWDPFFPVHLEDTLFHVLLLFCKHQLQVVPVVVK SELQNAVIQLLLQSAGLEWFDAIADKPLSEYREEHLITVCGEQSLSEALHRLWESQIGVVAVVSRGNGSVIGCIRNSDAYLLVENNNLFSNRKTITAEEF IHTEPAADGDDPIIERDLGALLSAGTLKLKNAFLPKMDSVVTNKRSDTLKHAMVEMARTNSSFSFLVDGSNNRPTGVLTLRDVIVQFAPPCMDSSFQGGG FFDFALEQAGCHEKNGTVVCNRQASSSVRLVKATDAAASSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10042308 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	12.1	0.9263
AT3G18800			unknown protein		Lus10020872 [exp]	14.5	0.9117
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	14.6	0.9132
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	18.9	0.9190
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	22.9	0.9153
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	23.5	0.9051
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	27.9	0.9101
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	28.5	0.9109
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	28.6	0.9129
AT1G54460			TPX2 (targeting protein for Xk...		Lus10042543 [exp]	37.9	0.8386

Compare expression of checked genes

Lus10042308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.