Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 190 / 1e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 159 / 3e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 66 / 2e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 64 / 5e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 61 / 6e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 59 / 2e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 59 / 2e-09 RLK receptor lectin kinase (.1) AT4G02410 59 / 4e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT3G16530 56 / 8e-09 Legume lectin family protein (.1) AT3G15356 56 / 1e-08 Legume lectin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004277 [exp] 194 / 5e-56 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 194 / 8e-56 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 146 / 2e-38 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 142 / 5e-37 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 139 / 8e-36 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10004279 [exp] 135 / 2e-34 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 131 / 2e-33 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 114 / 2e-27 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 114 / 2e-27 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004500 [exp] 258 / 3e-80 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 249 / 8e-77 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 244 / 1e-74 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 223 / 9e-67 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 163 / 2e-44 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 136 / 7e-35 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 135 / 1e-34 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 127 / 4e-32 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 126 / 8e-32 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 126 / 1e-31 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10042309 pacid=23153532 polypeptide=Lus10042309 locus=Lus10042309.g ID=Lus10042309.BGIv1.0 annot-version=v1.0 ATGGCAATGATGCATCTTCCCCTGTGGTTGTCACTTCTAGTCATCATCATCCTTCCATCTGTTACTCAGATGTCCGATTCTTCAGTTTACTTCAAAGCAA CCCAATTTAGTGCAGGAGACCCAAACTTCTCTTACCAGGGAGACGCCGCTGCTTTCAATGGAGCAGCTCAAATAGCAAACAAGCGTACTGAGATATTCCG AACAGGCTGGCTCACTTATTCTGCCCAAATCCCCATTTGGGACTCTGCTTCTTCTTCATCAGGACAAAAAGTCACAGATTTCACCACTCACTTCTCCTTC ATCATCGACACCGGCGGCAGCGATAGGAGTTCCGACGGACTCGCCTTCTTCATGGGTCCCGCCGGGTTTCAGATCCCGCCCAATTCCGTCGGCGGGTATC TGGGCCTCTACAATTCAACCACCGTCGACGCCGAATTTTCTCCGGCTTACTACCAGACCTTGATTGTGGAATTTGACACCCATTCCAATACCAAATGGGA TCCTCCATATCCTCACGTCGGGATCAATCGGAACTCGCTTGCGTCCTCTGTTTCCACTCCCTGGAATTACAGCTTTCACAGCGGAGATGTCGCCGACGCC TGGATTTCTTACGACTCCGCTACAAAGAATCTCACCGTGACCTGGAGCTACAAAGCCACTTCAATCCCTGGAGAGAATTCGAGCCTTTCTCTTGAATTGG ACCTGTCGAATTCCCTTCCTCAATGGGTAACGGTTGGATTTAGTGCGTCTACCGCTAATTTCGATGAACAGCATAGGGTTTTGTCTTGGGAGTTCAATTC TAGCTTGGGTATCACAACAGCAGCAAGGAATTCGAAACCGAAATCAAAATCGGTGATCATCATGGCTACTACTGGCGCTGCTGCAGTTGCTTTGATAATT GCAGTTGGATTTTTTATTCGGAGAAGAAGGATGTTGGTGCAGCATCAGCATCGACATCCGATGATCGGGATGTCGATCAACAAAGACTTAGAGAGAGGAA CGAGACCGGCGAGATTTGGGTACGAAGAACTCGCTGAAGTGACAACAATTTCTCGGAGGAGAGGAAGTTGGGAGAAGGAGGATTCGGGGCTGTTTATAGT GGATATCTCAGCGGGTTGGATCTTGCTGTGGCAGTGA
AA sequence Show only first row Show all	>Lus10042309 pacid=23153532 polypeptide=Lus10042309 locus=Lus10042309.g ID=Lus10042309.BGIv1.0 annot-version=v1.0 MAMMHLPLWLSLLVIIILPSVTQMSDSSVYFKATQFSAGDPNFSYQGDAAAFNGAAQIANKRTEIFRTGWLTYSAQIPIWDSASSSSGQKVTDFTTHFSF IIDTGGSDRSSDGLAFFMGPAGFQIPPNSVGGYLGLYNSTTVDAEFSPAYYQTLIVEFDTHSNTKWDPPYPHVGINRNSLASSVSTPWNYSFHSGDVADA WISYDSATKNLTVTWSYKATSIPGENSSLSLELDLSNSLPQWVTVGFSASTANFDEQHRVLSWEFNSSLGITTAARNSKPKSKSVIIMATTGAAAVALII AVGFFIRRRRMLVQHQHRHPMIGMSINKDLERGTRPARFGYEELAEVTTISRRRGSWEKEDSGLFIVDISAGWILLWQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	0	1
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	4.9	0.9548
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	5.8	0.9321
AT1G04670			unknown protein		Lus10004041 [exp]	7.6	0.9482
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	8.8	0.8912
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	9.3	0.9482
					Lus10006918 [exp]	10.8	0.9482
					Lus10007508 [exp]	12.0	0.9482
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	13.2	0.9482
AT5G16610			unknown protein		Lus10031615 [exp]	13.3	0.6773
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	13.6	0.7894

Compare expression of checked genes

Lus10042309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.