Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 238 / 2e-74 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 236 / 1e-73 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 188 / 1e-55 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 185 / 2e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 185 / 3e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 184 / 3e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 184 / 5e-54 RLK receptor lectin kinase (.1) AT4G02410 184 / 8e-54 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 181 / 1e-52 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 178 / 1e-51 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004279 [exp] 260 / 3e-82 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 248 / 1e-79 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 251 / 4e-79 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007079 [exp] 239 / 6e-79 AT5G10530 335 / 3e-111 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 250 / 1e-78 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 241 / 1e-78 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 242 / 6e-76 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 239 / 2e-74 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 236 / 1e-73 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004400 [exp] 258 / 3e-82 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 257 / 2e-81 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 256 / 3e-81 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 255 / 7e-81 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 251 / 8e-79 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 251 / 8e-79 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 249 / 3e-78 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 249 / 3e-78 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 248 / 3e-78 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 248 / 4e-78 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042310 pacid=23153895 polypeptide=Lus10042310 locus=Lus10042310.g ID=Lus10042310.BGIv1.0 annot-version=v1.0 ATGCCAAACGGCAGCATCGATTCGCATCTATTCCGCAACAACGATCATCCTCACAGCTTCAATTGGACGTTGAGGTACAAGATTTCGTTGGGATTAGCTT CGGGACTGCATTACCTGCACGAGGGATGGGAACAATGTGTGGTGCATCGCGATATCAAGCCGAGTAATATAATGTTGGATTCGGGCTACAATGCTAAGTT GGGGGATTTCGGGTCAGCCAGACTTATGGACCATGACCATGGTGGTGGTGGTGGTGATTCGAGGACAACCGTATTGGCAGGAACATTGGGCTACTTAGCT CCCGAGTGCATAAGAACTTGCAGGGCTAGTAAAGAGTCGGATGTTTACAGCTTCGGAGTGGTTCTATTGGAAATTGCAACAGGTAGAAAGGTGTTGGATC CTATTGATCAAGAGAAGCCTGAAATCAAATTGGTTCCGTGGGTTTGGCATCTTTACGAATGTGGGGAACTCATTTCAGCAGTTGATCCCAAACTGGGCTC CGACTTTGATTGTGAACAAGCAGAACGACTGCTCGTTATTGGGTTATGGTGTGCTCATCCTGATAGCAAAGTGAGACCAAACATCCATCCAGCAATACAA GTTCTCAAGTGTGAGACCCTACTCCCGATTCTGCCTGCTAGAGGAGAATCAGTTCCGACATCACATTTTCCGGTCAATCCTCATGCCACTAATTCCTCAT CTCAAGGCTCAGTAACCAATTCTGTCATTCACATAGGTCGATAA
AA sequence Show only first row Show all	>Lus10042310 pacid=23153895 polypeptide=Lus10042310 locus=Lus10042310.g ID=Lus10042310.BGIv1.0 annot-version=v1.0 MPNGSIDSHLFRNNDHPHSFNWTLRYKISLGLASGLHYLHEGWEQCVVHRDIKPSNIMLDSGYNAKLGDFGSARLMDHDHGGGGGDSRTTVLAGTLGYLA PECIRTCRASKESDVYSFGVVLLEIATGRKVLDPIDQEKPEIKLVPWVWHLYECGELISAVDPKLGSDFDCEQAERLLVIGLWCAHPDSKVRPNIHPAIQ VLKCETLLPILPARGESVPTSHFPVNPHATNSSSQGSVTNSVIHIGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	0	1
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	3.5	0.7716
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	9.2	0.8007
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	10.7	0.7305
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	11.0	0.7587
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	13.6	0.7894
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	16.6	0.7708
					Lus10036058 [exp]	17.4	0.7429
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	18.0	0.7314
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	21.8	0.7168
					Lus10021816 [exp]	25.5	0.7602

Compare expression of checked genes

Lus10042310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.