Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 489 / 3e-176 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 435 / 8e-155 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 424 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 400 / 7e-141 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 368 / 2e-128 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 306 / 9e-104 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 256 / 2e-84 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 243 / 6e-79 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026351 [exp] 616 / 0 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 469 / 5e-168 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 457 / 1e-163 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 436 / 4e-155 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 435 / 2e-152 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 376 / 4e-132 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 326 / 1e-111 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 273 / 2e-91 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10012147 [exp] 265 / 2e-87 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 504 / 0 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 475 / 2e-170 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 439 / 9e-156 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 436 / 4e-155 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 428 / 4e-152 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 397 / 2e-139 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 320 / 1e-109 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 305 / 7e-105 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 291 / 5e-98 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.007G123700 [exp] 280 / 2e-93 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10042311 pacid=23153964 polypeptide=Lus10042311 locus=Lus10042311.g ID=Lus10042311.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAGAAGAGAAGACGAAGATTTTAGTAATTGGAGGAACAGGGTACATAGGGAGATACGTAGTGGAAGCTAGCGCCAAGGCAGGTAACCCCA CTTACGCTCTCGTCAGGCAGTCCACTCTTACCAGCCCTACCAAATCCAAGGCCATCGAAAGCTTCAAATCCCTCGGTGTCAAATTCCTCATTGGGGATCT GAAAGATAGCGAGAATTTGGTGAAGGTGCTGAAGATGGTGGATGTTGTGATCTCTACCGTTGGTCATGCACACCTGGTTGACCAAGAGAAGATCATCTCC GCCATTAAACAAGCTGGCAACATCAAGAGATTCTTGCCTTCAGAGTTTGGAAACGATGTGGATCGGGTTCATACGGTAGAGCCAGCAAAAACTGCATATG CTACCAAAGTGAAAATCCGACGAGCCATAGAGGCGGCAGGCATCCCATTCACATATGTCTCATGTAACTTCTTTGCAGGTTACTTTCTCCCAACCCTAAA CCAGCCTGGTATAACCACTCCTCCTCGTGATAAAGTTGTCATTTTGGGCGATGGAACCCCAAAAGCAATTTTCAACAAGGAAGAGGATATAGGAATCTAC ACTATCAAAGCAGTGGATGATCCAAGAACGTTGAACAAGATCTTGTACATTAGGCCACCCGCCAATACCATATCCTTCAACGATCTTGTTTCCTTGTGGG AGAAGAAGATCGGCAAGACCCTCGAGAGAAGTTACATCTCCGAAGAACAACTTCTCAACAACATCCGAGAGTCTTCACCTCCCCTGAATGTGATACTGTC AATTGGGTACTCGGTGTTCGTCAAGGGAGATCACACCAACTTCGAGATTGAACCGTCATTTGGAGTGGAAGCTTCTGAGCTTTACCCTGATGTCAAGTAC ACAACTGTGGATGAGTATCTGAGCCAATTTGTCTGA
AA sequence Show only first row Show all	>Lus10042311 pacid=23153964 polypeptide=Lus10042311 locus=Lus10042311.g ID=Lus10042311.BGIv1.0 annot-version=v1.0 MAEEEEKTKILVIGGTGYIGRYVVEASAKAGNPTYALVRQSTLTSPTKSKAIESFKSLGVKFLIGDLKDSENLVKVLKMVDVVISTVGHAHLVDQEKIIS AIKQAGNIKRFLPSEFGNDVDRVHTVEPAKTAYATKVKIRRAIEAAGIPFTYVSCNFFAGYFLPTLNQPGITTPPRDKVVILGDGTPKAIFNKEEDIGIY TIKAVDDPRTLNKILYIRPPANTISFNDLVSLWEKKIGKTLERSYISEEQLLNNIRESSPPLNVILSIGYSVFVKGDHTNFEIEPSFGVEASELYPDVKY TTVDEYLSQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	0	1
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	1.4	0.9568
AT5G04250			Cysteine proteinases superfami...		Lus10037977 [exp]	5.5	0.9368
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	5.7	0.9551
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	6.0	0.9484
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	6.2	0.9561
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	6.5	0.9387
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	7.7	0.9533
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	9.1	0.9213
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	10.4	0.9344
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	12.0	0.9495

Compare expression of checked genes

Lus10042311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.