Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 253 / 8e-84 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 246 / 6e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 239 / 3e-78 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 228 / 6e-74 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 204 / 2e-64 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 174 / 7e-53 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 134 / 3e-37 ATPRR2 pinoresinol reductase 2 (.1) AT1G32100 126 / 2e-34 ATPRR1 pinoresinol reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026350 [exp] 340 / 4e-118 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 273 / 1e-91 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 270 / 2e-90 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 259 / 4e-86 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 236 / 1e-77 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 231 / 3e-75 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 227 / 1e-71 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 179 / 1e-54 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10040443 [exp] 153 / 7e-45 AT4G34540 290 / 5e-98 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 280 / 2e-94 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 263 / 1e-87 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 238 / 7e-78 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 236 / 3e-77 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 236 / 1e-76 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 232 / 2e-75 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 161 / 5e-48 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 145 / 1e-42 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 144 / 1e-41 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 142 / 2e-40 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10042312 pacid=23153492 polypeptide=Lus10042312 locus=Lus10042312.g ID=Lus10042312.BGIv1.0 annot-version=v1.0 ATGCTAACCTTACAGTCTACTGCAGCTGACATTTTAGACTACAACTTTAAACTTTCAGCTTCGCAGTTAGGATCTCATAATCTTCACCGCTCTTTAAGCC TCTCATTCCCAGAGTTCCAAGAAATAGCGGAGAATAACAAGAGTCGGATTCTGTTCATAGGAGGCACGGGCTACATCGGAAAGTACATAGTTGAAGCTAG CGCCAAATCTGGGGATCTTTCTGATCACGAGAGCTTGGTGAAGGCGATAAAGCAAGTGGATGTCTTGATTTCTACGCTGGGTCACGCTCAACTTCCTGAT CAAGTCCGGATAGTCTCTGCCATCAAAGAAGCTGGTAACATTAAGGCCGAGTATTCGCCGTCCATCACTCTGTTTTTCTCCTTCTGTTTCTTTCATGCAT CCTATCTAGAAGCCACCACTCCACCGCGGGACAAAGTTGTTATATTTGGTGACGGCAACCCAAAAGATGATCCAAGAACTTTGAACAAGGCTCTATACGT TAGACCACCAGGCAACATAATATCCCTTAATGATCTAGTGTCCTTGTGGGAGAAGAAGATTGAAACAACTGTTGAAAGGTCTTACATCTCAGAGGAACAA CTTCTGAAGAACATCCAAGAATCTGCAGCTCCAATGAATGTGATACTCTTGATTCGTCACTCTGTTTTCGTGAAGGGAGATCAAACCAACTTCGAAATTG AACCTTCATTTGGAATAGAAGCCTCAGAGCTTTACCCCGACGTCAAATACACCAGGGTGGACGAGTACCTTGACCAATTTGTCTGA
AA sequence Show only first row Show all	>Lus10042312 pacid=23153492 polypeptide=Lus10042312 locus=Lus10042312.g ID=Lus10042312.BGIv1.0 annot-version=v1.0 MLTLQSTAADILDYNFKLSASQLGSHNLHRSLSLSFPEFQEIAENNKSRILFIGGTGYIGKYIVEASAKSGDLSDHESLVKAIKQVDVLISTLGHAQLPD QVRIVSAIKEAGNIKAEYSPSITLFFSFCFFHASYLEATTPPRDKVVIFGDGNPKDDPRTLNKALYVRPPGNIISLNDLVSLWEKKIETTVERSYISEEQ LLKNIQESAAPMNVILLIRHSVFVKGDQTNFEIEPSFGIEASELYPDVKYTRVDEYLDQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	7.9	0.8882
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	8.8	0.9061
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10039320 [exp]	11.3	0.8910
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	11.4	0.9004
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	12.2	0.8928
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	13.0	0.8871
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	13.4	0.8962
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	15.5	0.8694
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	19.0	0.8966
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	22.3	0.8912

Compare expression of checked genes

Lus10042312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.