Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08560 51 / 1e-07 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 45 / 1e-05 ATSYP112, SYP112 syntaxin of plants 112 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014297 [exp] 49 / 7e-07 AT2G18260 319 / 5e-109 syntaxin of plants 112 (.1) Lus10026005 [exp] 44 / 6e-05 AT2G18260 327 / 2e-112 syntaxin of plants 112 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G117900 [exp] 66 / 9e-13 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1) Potri.007G023100 [exp] 53 / 4e-08 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.005G121300 [exp] 51 / 1e-07 AT2G18260 356 / 6e-124 syntaxin of plants 112 (.1) Potri.013G053200 [exp] 46 / 6e-06 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 44 / 5e-05 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042314 pacid=23153597 polypeptide=Lus10042314 locus=Lus10042314.g ID=Lus10042314.BGIv1.0 annot-version=v1.0 ATGAAATCGTTCATGAACTACGCGGAGCTGAAGAAGCAATCCAGTAGCCCCGATTTGGAGAAAGGGCAGCCAGTAAAAGAAGATGATGATGATCGCAACC TCCTCAACCACCGATTCAAGGAAAAAGTGAAGTCAATGAAGGCAGAATTGGAAGATGTCACGAAACTCATCCGCACCCTGAAGTCCACAGCGAGAAAAGA GGGAATGATCAGTACTGACGACGGCAGAGTGATGATCAACTCCGATCATATGATCGCAGTTCTTCGGAAGGCGAAGAGCATCAAAACGTCGCTGGAGTGG CTACAGAAATCCAATCCAGAGCAAGGGGCAGTAACCAATGAATTGAGAGGTAAGTTGATGGAAATTGTGCAGGATTTGATCAGCTTGGAGATGACTGGCG TTGTTCCGGAAGCGGAGATCGTGGAGGACGCGGAGTTGGAGGAGCTATTGGCGGAGATGAGGGTTTTGGTGGAATCAAACGGAGAGCTGGAAATCACAAA CAGCAGCAGCATTGGAGAAGAAGAAGAAGGTGTGAAGAAGAGTGGTGGCGTTGGAAATGCTATTGGGGTGTTCTTAGCTGAACGAATGAAGGAGCAGAGG AAGAATTACAAGTGTTGGATTGGGCTTTTCTTGTTACTTGTTTTGTTTATTTCACTTGCAAGCTTCGCCCCGTGA
AA sequence Show only first row Show all	>Lus10042314 pacid=23153597 polypeptide=Lus10042314 locus=Lus10042314.g ID=Lus10042314.BGIv1.0 annot-version=v1.0 MKSFMNYAELKKQSSSPDLEKGQPVKEDDDDRNLLNHRFKEKVKSMKAELEDVTKLIRTLKSTARKEGMISTDDGRVMINSDHMIAVLRKAKSIKTSLEW LQKSNPEQGAVTNELRGKLMEIVQDLISLEMTGVVPEAEIVEDAELEELLAEMRVLVESNGELEITNSSSIGEEEEGVKKSGGVGNAIGVFLAERMKEQR KNYKCWIGLFLLLVLFISLASFAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	2.6	0.9502
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	3.7	0.9437
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	5.7	0.9296
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	11.3	0.9381
AT2G40370		LAC5	laccase 5 (.1)		Lus10017426 [exp]	12.4	0.9268
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	13.6	0.9329
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	14.0	0.9401
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	15.7	0.9335
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	22.6	0.9307
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	24.2	0.9286

Compare expression of checked genes

Lus10042314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.