Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 383 / 6e-133 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G19730 263 / 2e-85 Pectin lyase-like superfamily protein (.1) AT5G55590 239 / 3e-76 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G07430 238 / 5e-76 Pectin lyase-like superfamily protein (.1) AT5G47500 234 / 1e-74 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 223 / 1e-69 Pectin lyase-like superfamily protein (.1) AT5G07420 220 / 5e-69 Pectin lyase-like superfamily protein (.1) AT3G29090 217 / 3e-68 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT3G17060 211 / 2e-65 Pectin lyase-like superfamily protein (.1) AT1G05310 207 / 7e-64 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026347 [exp] 562 / 0 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10023560 [exp] 444 / 7e-157 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 266 / 2e-86 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 260 / 3e-84 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 258 / 3e-84 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 255 / 9e-83 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 256 / 2e-82 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10000045 [exp] 243 / 1e-79 AT2G21610 214 / 8e-69 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10004720 [exp] 241 / 8e-77 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156300 [exp] 424 / 2e-149 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 265 / 3e-86 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 258 / 7e-84 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 231 / 3e-73 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 229 / 2e-72 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 227 / 4e-71 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 220 / 4e-69 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 218 / 8e-69 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.006G120100 [exp] 218 / 2e-67 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 213 / 6e-66 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10042315 pacid=23153664 polypeptide=Lus10042315 locus=Lus10042315.g ID=Lus10042315.BGIv1.0 annot-version=v1.0 ATGGCAACTTACGTTAAACATCCCCCCAAATTGATTTCCCTAAGAAAAACAACTTCGACGCCAAGAAATCGGCTCCCTTTCATCCATTATCCAACCCCGC TCCTCCAATTTGTTCATATAAATATTTCAACTCATCATACAAAATTTCAATTCACGAGTCAGGAGGCGGTCCGCTCGGTTCCATCCGACAACTCGGAATT GGTTTTCATATGGGTTAAACCGGGCGTCTACGTCGAAAAAGTCACGGTCCCTGCAGACAAGCCGTTCATTACTCTTAGCGGAACCTCTGGCGTCTCTGCA AACACGACAGTGATCACATGGAGCCAGTCCGGTGACAATATTTTTGAATCGGCTACTCTCTCTGTCTTCGCGCCTTTCTTCGTTGCTCGATTTCTCACCG TTCAGAACACATACGGCAGCGGAGGGAGAGCTGTGGCTCTAAGGGTTTCCGGTGACAGGGCTGCGTTTTACGGGTGTAGGATCCTGTCCTACCAGGACAC TCTCTTGGACGATACCGGCAACCATTATTATTCCAACTGTTACATCGAAGGAGCCACTGATTTCATCTGTGGCGATGCTGCCTCCCTCTTTGAGAAATGC CATATCCATTCAGTATCAGAGAGCAATGGGTTCATCACAGCACAACACAGGGACGTAGAGACCGACGAAACTGGATACACTTTCTTGGGGTGCAAGATAA CTGCAACCGGCCCAACTTTCCTAGGAAGGCCATGGGGTGCTTATTCAAGGGTTGTTTTTGCATATTCATACATGGCTTCTAATGTCCTTCCCGCTGGATG GAGTGATTGGGGAGACAACACCAAGCAAAGTACTGCGTTCTATGCGGAATACAAGAATTACGGACCGGGAGCTGATAAATCCAAGAGGGTAGCTTGGTCG AAGAAATTATCGACCGGAGAGGTTTCGCCGTTTTTTAGCAAGAAAATGATTGGTGGGAGAGATTGGATTAGGGCTGCTCCGAAACTATTTAGACTCGGGG CAAAAATCGTCAAAGCTGGCTCAGCTGGCACTCCTTCTCAATCTTAA
AA sequence Show only first row Show all	>Lus10042315 pacid=23153664 polypeptide=Lus10042315 locus=Lus10042315.g ID=Lus10042315.BGIv1.0 annot-version=v1.0 MATYVKHPPKLISLRKTTSTPRNRLPFIHYPTPLLQFVHINISTHHTKFQFTSQEAVRSVPSDNSELVFIWVKPGVYVEKVTVPADKPFITLSGTSGVSA NTTVITWSQSGDNIFESATLSVFAPFFVARFLTVQNTYGSGGRAVALRVSGDRAAFYGCRILSYQDTLLDDTGNHYYSNCYIEGATDFICGDAASLFEKC HIHSVSESNGFITAQHRDVETDETGYTFLGCKITATGPTFLGRPWGAYSRVVFAYSYMASNVLPAGWSDWGDNTKQSTAFYAEYKNYGPGADKSKRVAWS KKLSTGEVSPFFSKKMIGGRDWIRAAPKLFRLGAKIVKAGSAGTPSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	1.0	0.8887
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	6.7	0.7889
					Lus10012132 [exp]	10.7	0.8126
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	13.6	0.7099
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	16.0	0.7942
AT3G50120			Plant protein of unknown funct...		Lus10006802 [exp]	19.3	0.7795
AT1G14550			Peroxidase superfamily protein...		Lus10024206 [exp]	19.8	0.6719
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	21.9	0.8104
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036459 [exp]	23.2	0.7058
AT1G52540			Protein kinase superfamily pro...		Lus10019988 [exp]	25.8	0.6502

Compare expression of checked genes

Lus10042315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.