Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21620 251 / 4e-86 RD2 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G58450 47 / 1e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G11930 44 / 2e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT1G44760 39 / 0.0008 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026346 [exp] 278 / 6e-94 AT2G21620 269 / 5e-90 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10042317 [exp] 164 / 4e-51 AT2G21620 177 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10031594 [exp] 45 / 7e-06 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10033749 [exp] 45 / 1e-05 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10039730 [exp] 43 / 4e-05 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10006701 [exp] 39 / 0.0008 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156200 [exp] 254 / 3e-87 AT2G21620 256 / 3e-88 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.009G117500 [exp] 239 / 2e-81 AT2G21620 258 / 5e-89 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.004G156100 [exp] 217 / 2e-72 AT2G21620 241 / 6e-82 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G198200 [exp] 46 / 2e-06 AT3G11930 209 / 9e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.014G122000 [exp] 45 / 3e-06 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G064000 [exp] 44 / 1e-05 AT3G11930 214 / 4e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.005G015200 [exp] 43 / 3e-05 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 41 / 7e-05 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.013G009800 [exp] 40 / 0.0002 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G193800 [exp] 40 / 0.0003 AT2G47710 213 / 1e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10042316 pacid=23153773 polypeptide=Lus10042316 locus=Lus10042316.g ID=Lus10042316.BGIv1.0 annot-version=v1.0 ATGGAAGTGTTGCAGGAAGAAGAAGAGTACAACTGGAAGGAAGTAAAGTTGCCATCTTTGATCCCTAAAGTTCCAGAACCAGAGTTGGAGAGAGAGAAAG GGGAAAGGAGGAGAGGCAGAGATATTATCATAGCGATTGATCATGGACCCAACAGCAAGCATGCCTTTGATTGGGCTCTCATCCATTTCTCCAGGCTTGC CGATACCCTCCATCTTGTTCACGCCGTCTCAAGTGTGAAGAATGATATTGTGGATGAGATGACGCAAGGCCTTATGGAGAAGCTCGCTGTTGAGGCTTTT CAGGTCTCTATGGTGAAAAGTGTGGCTAGGATAGTGCAAGGAGATGCAGGCAAAGTAATTTGCAAGGAAGCTGAAAGGATTAAGCCTGCAGCTGTTGTGA TGGGCACTAGAGGCAGAAGCTTAGTTCAGAGTGTGCTGCAAGGAAGTGTGAGTGAGTACTGTTTTCACCACTGCAAAGCTGCACCTGTCATCATTGTTCC AGGGACAGAAGCTGGAGATGAATCTATGGTATCATGGAACTAA
AA sequence Show only first row Show all	>Lus10042316 pacid=23153773 polypeptide=Lus10042316 locus=Lus10042316.g ID=Lus10042316.BGIv1.0 annot-version=v1.0 MEVLQEEEEYNWKEVKLPSLIPKVPEPELEREKGERRRGRDIIIAIDHGPNSKHAFDWALIHFSRLADTLHLVHAVSSVKNDIVDEMTQGLMEKLAVEAF QVSMVKSVARIVQGDAGKVICKEAERIKPAAVVMGTRGRSLVQSVLQGSVSEYCFHHCKAAPVIIVPGTEAGDESMVSWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	1.7	0.9498
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	3.2	0.9556
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	4.0	0.9483
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	4.2	0.9579
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	6.2	0.9177
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	7.1	0.9453
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	7.9	0.9057
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	8.2	0.9307
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	8.4	0.9419
AT2G17705			unknown protein		Lus10025950 [exp]	8.7	0.9286

Compare expression of checked genes

Lus10042316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.