Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21660 120 / 4e-35 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 115 / 5e-34 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G26420 91 / 9e-23 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G23830 83 / 1e-20 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 82 / 1e-20 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G61030 77 / 4e-17 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT2G21690 72 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 71 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 74 / 8e-16 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G76460 71 / 3e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026343 [exp] 147 / 2e-45 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10026344 [exp] 134 / 2e-40 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 134 / 2e-40 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10040454 [exp] 134 / 6e-40 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 130 / 8e-39 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10022551 [exp] 83 / 1e-20 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 83 / 1e-20 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 82 / 4e-20 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 79 / 7e-19 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155300 [exp] 119 / 8e-35 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 119 / 2e-34 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G207100 [exp] 99 / 6e-26 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.017G059000 [exp] 82 / 1e-20 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 80 / 2e-19 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 78 / 9e-18 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 77 / 2e-17 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G340800 [exp] 77 / 2e-17 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 76 / 1e-16 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 74 / 2e-16 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10042321 pacid=23153941 polypeptide=Lus10042321 locus=Lus10042321.g ID=Lus10042321.BGIv1.0 annot-version=v1.0 ATGGCTGATGGTGAGTACAGATGCTTCGTTGGTGGCCTCGCCTGGGCTACCACCGACGATGCACTCTATGAGGCTTTCAGAAACTTTGGCGATGTCGCTG AATCGAAGGTTATCAACGATCGCGAGACGGGGAGGTCCCGTGGCTTTGGATTTGTGACTTTCCGCGACGAGAAGTCGATGAGGGATGCCATCGAGGGGAT GAACGGCCAGAATCTTGACGGTCAGGCGGAGGTGGTGGCGGTGGATATGGAAGCGGTGGCGGAGTGTTACAACAGGGGCGGAGGTGGTAGCGGTGGATAT GGAAGCGGTGGCGGAGGTGGATACGGAAGCGGTGGTGGTGGCGGTGGATACGGGGGTGGCAATCGGGGATATGGCGGTGGTGGGCGTGACCGTGATGGAG GATATGGCGGTGGCTACGGTGGAGGCCGTGACCGTGGCTACGGTGGTGATGGTGGGTCTGGGTACTCGAGGAGCGGCGGAGACTCGGGTGGAAACTGGAG GAATTAG
AA sequence Show only first row Show all	>Lus10042321 pacid=23153941 polypeptide=Lus10042321 locus=Lus10042321.g ID=Lus10042321.BGIv1.0 annot-version=v1.0 MADGEYRCFVGGLAWATTDDALYEAFRNFGDVAESKVINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGQAEVVAVDMEAVAECYNRGGGGSGGY GSGGGGGYGSGGGGGGYGGGNRGYGGGGRDRDGGYGGGYGGGRDRGYGGDGGSGYSRSGGDSGGNWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	0	1
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	1.7	0.8903
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10001025 [exp]	4.4	0.9057
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	4.9	0.8891
AT1G72460			Leucine-rich repeat protein ki...		Lus10008128 [exp]	7.5	0.8743
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015418 [exp]	9.2	0.9033
AT5G66780			unknown protein		Lus10014313 [exp]	12.8	0.8464
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	30.9	0.8833
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	34.6	0.8842
					Lus10018816 [exp]	41.4	0.8828
AT5G16110			unknown protein		Lus10028474 [exp]	46.4	0.8477

Compare expression of checked genes

Lus10042321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.