Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21710 700 / 0 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G02990 149 / 2e-38 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G44020 141 / 7e-36 Mitochondrial transcription termination factor family protein (.1) AT1G78930 142 / 1e-35 Mitochondrial transcription termination factor family protein (.1) AT4G38160 122 / 1e-30 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G14605 111 / 9e-26 Mitochondrial transcription termination factor family protein (.1) AT5G55580 110 / 3e-25 Mitochondrial transcription termination factor family protein (.1) AT2G34620 102 / 8e-24 Mitochondrial transcription termination factor family protein (.1) AT2G36000 84 / 1e-17 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT2G03050 80 / 2e-16 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026342 [exp] 481 / 5e-165 AT2G21710 222 / 3e-65 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 146 / 2e-37 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 142 / 4e-36 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 140 / 2e-35 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 129 / 1e-32 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 116 / 2e-28 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10022321 [exp] 119 / 3e-28 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 119 / 3e-28 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10037301 [exp] 100 / 8e-22 AT1G78930 508 / 4e-175 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116200 [exp] 828 / 0 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 154 / 3e-40 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 142 / 6e-36 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 138 / 2e-34 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 118 / 5e-28 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 114 / 1e-27 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 114 / 8e-27 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.001G361800 [exp] 111 / 1e-25 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 94 / 7e-21 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 88 / 2e-18 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10042322 pacid=23153846 polypeptide=Lus10042322 locus=Lus10042322.g ID=Lus10042322.BGIv1.0 annot-version=v1.0 ATGCTATCTTTCTCACATTATAACTCTCACCCTCTCTCCCACCGTATTCCCATCGCCGCCTTCTCAATCTCCGGCTCCCTCCTTCCCCGCCACCGTCCCC GAAACTCCCCGGAATCACCTGCCAGGGACGCCCCTCCCGACTTTTCTCATCCTCCGGAGCCCATTTCCCGCACCCACAATGCCAAAACCGCTTCCCTCCT ATCCCGTCACCTACATCGCCAATCCCCTGTTCCTCAACACGGGGAGGAATTTCAGCTACATGATGATGCTATCCCTCTCGAGGAGCAAGTTAAGCGTCAG GAGCTATCCCTTGTCACCACCAGGCGAGCTCCCAGGTTCCCTGGTTCCATCTCCTCCTACCGCTCTGGCGCCTCTACTTCTCCTCTGCAAACACTCTTCC CCTCTTACAACGATGAAGACGACGACGAGGAGGAGGACGAGGAAATTATAATCAAGGCAGTTGAGATCCGCAGGAAAGTTACCGCTGAGATTTTCTTGCA GGCTATGAAGAAGGGCAAATTCGGATTGACCTATTCCACCAATTTGGCCTCTAAATTGGGGGATTTCCTTGATTTTGTTATGATCCAAGCTGCCGAGATG AAGAGGTACCCTGAGTTTGAAAATTCGAGATTCAATCTTCGAGCTAAGATTGTCATTCAAGACCTTGGAGTCGTCCCGCTTATCAGGTGGTTGAAGCACA ATGAGTTGTCGTATCCAAAGATTGTGAAGCTCTTGAACATGGCAAGAGGTGAACTTGAATCCGTTAGGCGACTTGCTGAATGGTTAAAGACGATTCATGT GAAAGGCGAATTTCTCGGGCCAGTGCTCACCAAATCAGGCGACAACATCTTGAAGCGCAGCAACGAGGAGCTGGATGAAATTGTTGAGTATTTGGAGTCC GAAGGTGTTAGGAGAGATTGGATGGGGTATGTGATGAGTCGTTCCCCACAATTGTTATCTTACAGTATGGATGAAGTGAGAACTCGAGTGAAGTTCTTTA CGGATATGGGCATGAACGAGAAGGATTTCGGTACGATGGTGTTTGAATATCCTAGAGTCCTTGGATATTTCAGTCTTGAGGAGATGAACCAAAAGGTTGA TTATCTGAAGGAGTTTGGCATCAGTCATGAAGATGTTGGGAGACTTCTAGCATTTAAGCCACAGTTGATGGGTTGTAGCATTGAGGGAACATGGAAGCCT CTTATTAAGTATTTTTACTATCTTGGGATCACCAAAGATGGGATGAGGAGAATGCTTATGGTTAAGCCGATGGTTTTCTGTGTCGATTTGGAGAAGACCG TAGTGCCTAAGGTTCGTTTTTTTCAAGACATCGGCATTGAGGATACTGCCATTGGGAATATGCTTGCTAAGTTCCCTCCATTGCTCACCTACAGCCTGCA GAAGAAAATTCGGGCAGTGGTCATATTTTTGATGACGAGAGCTGGTGTTAGTCAAACGGACATTGCAAAGGTTATAGCTTCAGGGCCTGAACTGTTGGGG TGTAGCATAGTGCATAAACTAGACATCAATGTTAAGTACTTTCTGTCCCTTGGCATACGACCTCGAGTACTGGGGGAGATGATTGCAGACTTCCCGATGT TACTCCGTTACAACATAGAAGTCCTCCGTCCAAAGTATCGATACTTGAGGCGAACGATGGTTGGGAGCTTACAAGATGTCATTGAGTACCCAAGGTTCTT CAGCTATTCACTTGAGGAGCGAATAATTCCTCGGCACAAAGTTATGGTGGAGAACCAGATGAATATGAAACTGAGGTACATGCTAGCATGCAGCGATGAA GAGTTCGAGAAGAAGGTAGTGGCAACTTTGGAGAAGCGGCGAAGTTTTGAAGCTGGCTCACTAGGATTGTCAACAACTGGAAGTGACAACGATGAGTTGG TATGA
AA sequence Show only first row Show all	>Lus10042322 pacid=23153846 polypeptide=Lus10042322 locus=Lus10042322.g ID=Lus10042322.BGIv1.0 annot-version=v1.0 MLSFSHYNSHPLSHRIPIAAFSISGSLLPRHRPRNSPESPARDAPPDFSHPPEPISRTHNAKTASLLSRHLHRQSPVPQHGEEFQLHDDAIPLEEQVKRQ ELSLVTTRRAPRFPGSISSYRSGASTSPLQTLFPSYNDEDDDEEEDEEIIIKAVEIRRKVTAEIFLQAMKKGKFGLTYSTNLASKLGDFLDFVMIQAAEM KRYPEFENSRFNLRAKIVIQDLGVVPLIRWLKHNELSYPKIVKLLNMARGELESVRRLAEWLKTIHVKGEFLGPVLTKSGDNILKRSNEELDEIVEYLES EGVRRDWMGYVMSRSPQLLSYSMDEVRTRVKFFTDMGMNEKDFGTMVFEYPRVLGYFSLEEMNQKVDYLKEFGISHEDVGRLLAFKPQLMGCSIEGTWKP LIKYFYYLGITKDGMRRMLMVKPMVFCVDLEKTVVPKVRFFQDIGIEDTAIGNMLAKFPPLLTYSLQKKIRAVVIFLMTRAGVSQTDIAKVIASGPELLG CSIVHKLDINVKYFLSLGIRPRVLGEMIADFPMLLRYNIEVLRPKYRYLRRTMVGSLQDVIEYPRFFSYSLEERIIPRHKVMVENQMNMKLRYMLACSDE EFEKKVVATLEKRRSFEAGSLGLSTTGSDNDELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	0	1
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	1.4	0.9129
					Lus10032008 [exp]	2.0	0.8945
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	4.0	0.9110
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	5.5	0.8607
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	6.5	0.9024
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	7.1	0.7959
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	8.7	0.8754
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	9.5	0.8496
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	9.5	0.8292
AT5G62650			Tic22-like family protein (.1)		Lus10027537 [exp]	9.6	0.7993

Compare expression of checked genes

Lus10042322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.