Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19400 191 / 4e-59 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 172 / 8e-52 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT1G01500 117 / 2e-30 Erythronate-4-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026339 [exp] 461 / 2e-165 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10016311 [exp] 190 / 2e-58 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 189 / 3e-58 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10005124 [exp] 117 / 1e-30 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10007912 [exp] 110 / 8e-28 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 105 / 2e-26 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 79 / 1e-16 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10001676 [exp] 50 / 6e-07 AT4G24110 165 / 4e-50 unknown protein Lus10017328 [exp] 49 / 1e-06 AT4G24110 168 / 3e-51 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115800 [exp] 265 / 7e-88 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G260900 [exp] 204 / 6e-64 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.014G089600 [exp] 129 / 2e-35 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 125 / 1e-33 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042323 pacid=23153817 polypeptide=Lus10042323 locus=Lus10042323.g ID=Lus10042323.BGIv1.0 annot-version=v1.0 ATGGAGAACGCTTGTGAAACATCGAATGGATATCGGCCAATGGAGAATGGTAATGCAGTATTGTCTAAGGTATCATCATCGTTAGCTTGGCTTGATTTGA AAGTGTTCTACGTTCGGGTAAGCAAGTGTGAGATTGATGATTCCATGCCAGAGTACCTCATTGTAAACCATATCCCATTGTCCCCCCATACACTTCTCGA AGTGAATGGTGTTGGAATAAGTCGCATCGATTCTAATGGCAGAACCACCGTGCTTCGAAGAGACCGGTTGGATAAGAAATCCGAAGAAGCTACATTCGTG AGCACAAACAGTGTAAGGATGACAGGTAGTGTAAAATTCGAGGTTTACGAGAAAGACATTCTTGTACTGCATGGAGTGTTGGAACTCTGTAATGTTGTTA ATGGATGTGTTGGGGAAGTAAGGAGCGATTCCGAGAGATGGAGCATGAAGTCTGAGGCAGCAGATTTACGAACCTGCACTAGCTTTGTGGGTTCAGAATC ACTTGAAATCGAGGTCTATGTTGCGGGTTCATTTTCGGGGATTCCAATTATCTTAAGTACGACTCTGCATCTGAACGGCTATATGAACCGAAAGAGGAAA GGAATATTGGATTGTGTAGATGAACATGAGACAGGTAGAAGCTTTCAGGAGAATGGCTCGTCCAGCCTTCTTTTAGAGTCTGAAGAATCGTGGGATGACA AGGCTGAAAACGAAGACTACGAGGAGTTTTACAGAGGGATGGTTGATATGGAAGATGAAGATGGGGAGCTGTCATGGTTCAATGCAGGTTTGAGGGTTGG GGTTGGGATTGGACTCAGAATTTGTGTTGGAATTGGAATAGGTGTGGGGTTGCTGGTTAGAGCAGGGAACCTTAGGAGGATGCTATTTTGA
AA sequence Show only first row Show all	>Lus10042323 pacid=23153817 polypeptide=Lus10042323 locus=Lus10042323.g ID=Lus10042323.BGIv1.0 annot-version=v1.0 MENACETSNGYRPMENGNAVLSKVSSSLAWLDLKVFYVRVSKCEIDDSMPEYLIVNHIPLSPHTLLEVNGVGISRIDSNGRTTVLRRDRLDKKSEEATFV STNSVRMTGSVKFEVYEKDILVLHGVLELCNVVNGCVGEVRSDSERWSMKSEAADLRTCTSFVGSESLEIEVYVAGSFSGIPIILSTTLHLNGYMNRKRK GILDCVDEHETGRSFQENGSSSLLLESEESWDDKAENEDYEEFYRGMVDMEDEDGELSWFNAGLRVGVGIGLRICVGIGIGVGLLVRAGNLRRMLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	0	1
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	3.2	0.9150
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	7.1	0.9112
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	8.0	0.8840
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	8.5	0.8951
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	11.2	0.8772
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	11.3	0.7798
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	14.4	0.8482
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10008365 [exp]	20.0	0.8039
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	21.1	0.7845
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	21.6	0.8379

Compare expression of checked genes

Lus10042323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.