Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34490 616 / 0 ATCAP1 cyclase associated protein 1 (.1) AT4G34500 560 / 0 Protein kinase superfamily protein (.1) AT1G01540 483 / 1e-162 Protein kinase superfamily protein (.1.2) AT4G01330 471 / 2e-157 Protein kinase superfamily protein (.1.2) AT4G02630 438 / 1e-144 Protein kinase superfamily protein (.1) AT3G59110 420 / 2e-137 Protein kinase superfamily protein (.1) AT1G56720 400 / 6e-130 Protein kinase superfamily protein (.1.2.3) AT1G09440 395 / 2e-128 Protein kinase superfamily protein (.1) AT2G42960 393 / 2e-127 Protein kinase superfamily protein (.1) AT3G17420 388 / 8e-126 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026338 [exp] 1361 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10023575 [exp] 694 / 0 AT4G34490 647 / 0.0 cyclase associated protein 1 (.1) Lus10040460 [exp] 685 / 0 AT4G34490 642 / 0.0 cyclase associated protein 1 (.1) Lus10023574 [exp] 574 / 0 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 551 / 0 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 459 / 1e-152 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 457 / 2e-151 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 449 / 5e-149 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 447 / 2e-148 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115500 [exp] 669 / 0 AT4G34490 665 / 0.0 cyclase associated protein 1 (.1) Potri.004G153900 [exp] 666 / 0 AT4G34490 659 / 0.0 cyclase associated protein 1 (.1) Potri.004G154000 [exp] 608 / 0 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 599 / 0 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 479 / 1e-160 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 459 / 2e-152 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 426 / 1e-139 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 415 / 1e-135 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G003300 [exp] 415 / 2e-135 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G203300 [exp] 414 / 5e-135 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF08603 [flax] [poplar] CAP_C Adenylate cyclase associated (CAP) C terminal CL0391 [flax] [poplar] PF01213 [flax] [poplar] CAP_N Adenylate cyclase associated (CAP) N terminal CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042324 pacid=23153717 polypeptide=Lus10042324 locus=Lus10042324.g ID=Lus10042324.BGIv1.0 annot-version=v1.0 ATGTCGCTTTCCGGCAGGCTAACTTCCCAGACCCCATTCTTCAAATTAAAGCTCTACGTAGTGATCGGAATCCTCTCCGGCTGCCTGGTTTTACTATGCG TGACGCTCTCCTTCTGCATCCGGTTGACCCGGGCTTTCCGGAGACGCGGCTTGATGCGCGTGAAGCACAGCTCCGGCTCGATCCCGCTCGTCTCCAAGGA AATCCTCGAGATCAGTGCTTTAGATCTCGAAACTCAAGGTCAAGCTAAGCTCGTCTCCACCACCAACGCCATTACTACTATTACTAAGGAAGATGAGCGA CTTGGTGGCGGCCATGATCCCGAGTCCGTCAGTAGAGGCGGAAGAGATGAGGTGTCGGTGGAAGGGTGGGGCCGTTGGTACAGCTTGAAGGAACTGGAGA TAGCGACGAGGGGTTTCGCGGAGGAGAATGTGATCGGAGAAGGAGGCTACGGCGTCGTTTACAGGGGAGTGTTGACCGACGGCTCCGTCATTGCTGTCAA GAATCTCCTCAACAACAAAGGTCAGGCAGGGAGGGAGTTTAAGGTGGAAGTTGAAGCCATTGGCAAAGTAAGGCACAAGAATTTGGTTGGTTTAATTGGT TACTGCGCAGATGGCTCTCGAAGGATGCTTGTCTATGAATATGTTGACAACGGCAATTTAGAGCAGTGGTTACATGGATTTGACGGACCAGTTAGTCCAC TGTCGTGGGATATTCGGATGAAGATCGCCATTGGGACTGCTAAAGGACTAGCCTATTTGCATGAAGGTTTGGAACCTAAGGTGGTGCATCGCGACGTGAA ATCAAGCAACATTCTTCTGGGCAACAAATGGAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTGCTCGGTTCTGAGTCCAGCTACGTGACTACTCGT GTGATGGGCACTTTCGGATATGTTTCTCCTGATTATGCAAGCACGGGAATGCTTAACGAAGGGAGTGATGTATATAGTTTCGGCGTCCTGCTTATGGAGA TTATTACGGGAAGGAGTCCTGTCGATTACACCAGACCAGCTGGCGAGATGAATATGGTAGATTGGTTCAAGGGAATGGTGGCGAGCCGTAGGGGAGAAGA GCTAGTGGACCCTCTGATTGAGGTTCAGCCTGCTCCCAGAGCTCTGAAAAGAGCGCTGCTGATTTGTCTGCGATGCATAGATTTGGACGGTAGCAAAAGG CCGAAGATGGGGCAGATCGTTCATATGCTTGAAGCAGACGACTTCCCTTTCCGCGGACCAACCATTGCTCCACCACCAGATCTAGCCAGTTCTATCTCAA CCTATCTTCACAGTGTACACGGCGGCGTGGGGTTTGCCGCCATGGAGGAAAAGCTCATAGCTCGGCTGGAATCGGCGGTGGCACGATTGGAAGCGCTGTC TTCTTCTTCCCGCAGAGACATTGAAGTAGGAGATGCTTCATCTTCTGATCCCTCCATTCTCGCATTTGACGATCTGATTCGGGAGTCTCTTGGCAAACTT TCCGCTGCAGCTGACAAGATCGGTGGGCAGGTTCTTGAGGTCACCAAGGTTCTCGGAGAAGCTTTCTGTGTTGAAAAGGAACTTCTCGTCAAGATTAAGC AAACTAAGAAACCCGACATGGCGGGATTTGCTGAGCTCTTGAGGCCTCTCAATGAGGTCATTATGAAAGCAAATGCAATGTCTGAAGGGAGAAGATCGGA TTTCTTTAACCACTTGAAGGCTGCTGCCGACAGTCTTTCAGCTTTAGCTTGGATTGCATATACTGGCAAAGATTGCGGTATGAGCATGCCCATTGCACAT GTGGAAGAAAGCTGGCAAATGGCGGAATTTTACTGTAATAAGATCCTTGTTGAATACAAAAGCAAAGACCCGAATCATGTTGAGTGGGCTAAAGCTCTGA AGGGGTTGTACTTGCCAGCTTTGAGAGATTTTGTTAAGAGTCACTATCCGTTGGGTCCAGTATGGAGTGCTACTGGAAAATCTGTGGCCTCTGCTCCAGC CAAAAGTGGTGGAAGAGGTGCTCCTGCTCCTCCACCACCTCCACCGGCTTCTCTATTCAGTGGTGATAATTCTCAGCCTTCATCGTCAAAACCAAAGGTG GGCATGGCTGCGGTTTTCCAAGAAATTAATTCAGGGAAGCCAGTTACTGCAGGTCTGAAGAAGGTGACAGCTGATATGAAATCAAAGAATCGTGCTGATA GAAGTGGTGTTGTTGCTACTATTGATAAAGGAACTGCACCTTCACCTTCTTTCTCTAAGACGGGACCTCCAAAGCTTGAGCTTCAAATGGGTCGGAAGTG GGTTGTTGAGAATCAGATTGGAAAAAAGAACTTAGTCATTAGTGACTGTGATGCAAAGCAATCAGTGTATATGTATGGGTGCAAAGATTCTGTACTGCAG ATTCAAGGGAAAGTTAATAACATAACAATCGACAAGTGCACTAAGTCAGGGGTGGTATTTACGGATGTCGTAGCTGCTTGTGAGGTGGTAAATTGCAGTG GTGTTGAGGTGCAATGCCAGGGTTCAGCTCCAACAATTTCAGTGGACAATACTGGCGGCTGCCAGTTATATTTGAGCAAATATTCTCTGGAGACGTCCAT AACTACAGCAAAGTCTAGTGAGATCAATGTCTTGGTGCCTGGTGAAGAGACCGATGGCGACTTGGTAGAGCATGCGTTACCACAACAGTATATTCATGTG TTCAAGGATGGCAAGTTCGAAACAACTGCTGTATCTCACTCCGGAGGGTAA
AA sequence Show only first row Show all	>Lus10042324 pacid=23153717 polypeptide=Lus10042324 locus=Lus10042324.g ID=Lus10042324.BGIv1.0 annot-version=v1.0 MSLSGRLTSQTPFFKLKLYVVIGILSGCLVLLCVTLSFCIRLTRAFRRRGLMRVKHSSGSIPLVSKEILEISALDLETQGQAKLVSTTNAITTITKEDER LGGGHDPESVSRGGRDEVSVEGWGRWYSLKELEIATRGFAEENVIGEGGYGVVYRGVLTDGSVIAVKNLLNNKGQAGREFKVEVEAIGKVRHKNLVGLIG YCADGSRRMLVYEYVDNGNLEQWLHGFDGPVSPLSWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLGNKWNAKVSDFGLAKLLGSESSYVTTR VMGTFGYVSPDYASTGMLNEGSDVYSFGVLLMEIITGRSPVDYTRPAGEMNMVDWFKGMVASRRGEELVDPLIEVQPAPRALKRALLICLRCIDLDGSKR PKMGQIVHMLEADDFPFRGPTIAPPPDLASSISTYLHSVHGGVGFAAMEEKLIARLESAVARLEALSSSSRRDIEVGDASSSDPSILAFDDLIRESLGKL SAAADKIGGQVLEVTKVLGEAFCVEKELLVKIKQTKKPDMAGFAELLRPLNEVIMKANAMSEGRRSDFFNHLKAAADSLSALAWIAYTGKDCGMSMPIAH VEESWQMAEFYCNKILVEYKSKDPNHVEWAKALKGLYLPALRDFVKSHYPLGPVWSATGKSVASAPAKSGGRGAPAPPPPPPASLFSGDNSQPSSSKPKV GMAAVFQEINSGKPVTAGLKKVTADMKSKNRADRSGVVATIDKGTAPSPSFSKTGPPKLELQMGRKWVVENQIGKKNLVISDCDAKQSVYMYGCKDSVLQ IQGKVNNITIDKCTKSGVVFTDVVAACEVVNCSGVEVQCQGSAPTISVDNTGGCQLYLSKYSLETSITTAKSSEINVLVPGEETDGDLVEHALPQQYIHV FKDGKFETTAVSHSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	2.2	0.8533
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	3.3	0.8869
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	6.9	0.8860
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	11.5	0.8816
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	12.7	0.8525
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	13.6	0.8509
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	15.0	0.8395
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	16.2	0.8609
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	18.3	0.8419
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	19.0	0.8498

Compare expression of checked genes

Lus10042324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.