Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34460 597 / 0 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT4G02730 98 / 9e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 91 / 1e-19 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G52820 87 / 1e-18 WD-40 repeat family protein / notchless protein, putative (.1) AT5G25150 87 / 1e-18 TAF5 TBP-associated factor 5 (.1) AT3G49660 83 / 1e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 79 / 4e-16 RACK1C_AT receptor for activated C kinase 1C (.1) AT2G41500 80 / 5e-16 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G13480 79 / 8e-16 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G15980 76 / 1e-14 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026337 [exp] 709 / 0 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10023579 [exp] 674 / 0 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10040464 [exp] 658 / 0 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10014674 [exp] 94 / 3e-21 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 92 / 2e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 87 / 2e-18 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 86 / 4e-18 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10004167 [exp] 86 / 5e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10017570 [exp] 84 / 9e-18 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115300 [exp] 668 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 656 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.002G051900 [exp] 99 / 4e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 93 / 2e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.012G052700 [exp] 84 / 9e-18 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 81 / 6e-17 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 77 / 2e-15 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 77 / 3e-15 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 75 / 9e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 76 / 1e-14 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042325 pacid=23153986 polypeptide=Lus10042325 locus=Lus10042325.g ID=Lus10042325.BGIv1.0 annot-version=v1.0 ATGTCCGTCGCTGAGCTCAAAGAGCGTCATGTGGCAGCTTCTGATAAGGTCAATACTCTCAGGGAACGCTTGAAGCAGAAACGCCTTCAATTACTCGATA CGGATGTTTCTGGCTATTCCGGAGCTCAGGGGAAGACTCCGGTTACCTTCGGTCCCACCGATCTTGTGTGCTGCCGAACGCTTCAAGGTCATACTGGCAA GGTTTACTCGTTGGATTGGACTTCCGAGAAGAACCGGATAGTGAGTGCTTCTCAAGATGGAAGACTAATAGTATGGAATGCTCTAACGAGTCAGAAAACG CATGCTATCAAACTGCCCTGTGCATGGGTCATGACATGTGCCTTCTCTCCCTCCGGACAGTATGTTGCGTGCGGTGGTCTTGATAGTGTCTGCTCCATCT TCAACCTCAACTCCCCACCTGACAAGGACGGGAATTTGACCGTTTCAAAAATGCTTAGTGGGCATAGAGGTTATGTCTCGTGTTGCCAGTTTGTTCCTGA TGAAGATACTCACCTTATAACTAGTTCAGGTGATCAGACTTGTGCATTATGGGACACCACCACTGGTCTCAGAACTTCAGTCTTTGGTGGAGAATTTCAG TCTGGTCACACTGCTGATGTACTAAGTGTATCAATAAACGGAACAAACTCAAGAATGTTTGTATCCGGTTCTTGTGATGGAACTGCTCGATTATGGGACA CTCGTGTAGCCAGTCGTGCGTCTCGTACCTTCTATGGGCATGAGGGAGACGTCAATACCGTGAAGTTCTTTCCAGACGGAAACAGGTTCGGTACTGGTTC TGACGATGGCACGTGTAGGCTATTTGACATCAGGACGGGACATCAGCTGCAAGTGTACTCTCAACAGCAAGGTGAGAACGAAGAAGCAGCGCAAGTGACC TCCATTGCATTCTCTATATCAGGAAGGCTTCTTATTGCTAGCTACTCGAACGGTGACTGTTATGTGTGGGATACTCTACTAGCACAGGTTGTTTTAAACT TGGGGTCACTCCAGAACTCACATGAAGGCCGTATCAGCTGTTTGGGTTTGTCCGGTGATGGAAGCGCCTTATGCACTGGAAGTTGGGATACAAACCTTAA GATATGGGCATTTGGCGGGCACAGGAGGGTTGTCTGA
AA sequence Show only first row Show all	>Lus10042325 pacid=23153986 polypeptide=Lus10042325 locus=Lus10042325.g ID=Lus10042325.BGIv1.0 annot-version=v1.0 MSVAELKERHVAASDKVNTLRERLKQKRLQLLDTDVSGYSGAQGKTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKT HAIKLPCAWVMTCAFSPSGQYVACGGLDSVCSIFNLNSPPDKDGNLTVSKMLSGHRGYVSCCQFVPDEDTHLITSSGDQTCALWDTTTGLRTSVFGGEFQ SGHTADVLSVSINGTNSRMFVSGSCDGTARLWDTRVASRASRTFYGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYSQQQGENEEAAQVT SIAFSISGRLLIASYSNGDCYVWDTLLAQVVLNLGSLQNSHEGRISCLGLSGDGSALCTGSWDTNLKIWAFGGHRRVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	3.2	0.9076
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	4.6	0.8758
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	6.6	0.9086
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	10.0	0.8608
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	13.3	0.8860
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	14.7	0.8761
AT5G10010			unknown protein		Lus10005778 [exp]	15.3	0.8790
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	15.9	0.8703
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	16.5	0.8625
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	23.0	0.8726

Compare expression of checked genes

Lus10042325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.