Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34450 1363 / 0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) AT2G16200 95 / 1e-23 structural molecules (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026336 [exp] 1526 / 0 AT4G34450 1528 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10040465 [exp] 1411 / 0 AT4G34450 1526 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10023580 [exp] 1371 / 0 AT4G34450 1462 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115100 [exp] 1418 / 0 AT4G34450 1511 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Potri.004G153500 [exp] 1402 / 0 AT4G34450 1513 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF08752 [flax] [poplar] COP-gamma_platf Coatomer gamma subunit appendage platform subdomain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10042326 pacid=23153878 polypeptide=Lus10042326 locus=Lus10042326.g ID=Lus10042326.BGIv1.0 annot-version=v1.0 ATGGCTCAGCCCCTCGTCAAGAAAGATGATGATCGCGATGACGAAGCCGAATACTCTCCGTTCTTGGGAATAGAGAAGGGTGCTGTGCTTCAGGAAGCAA GGGTTTTCAATGACCCTCAGCTAGATCCAAGAAGATGCTCCCAGGTCATCACTAAGCTACTTTATCTTCTTAACCAAGGAGAAAGTTTCACGAAGGTTGA AGCCACGGAAGTTTTCTTTTCCGTAACAAAGCTATTTCAATCGAGAGATGTTGGCCTTAGACGGATGCTTTATTTAATGATAAAAGAATTATCTCCATCA TCTGATGAGGTCATTATTGTAACGAGTTCCCTCATGAAGGACATGAATAGCAAGACTGATATGTACCGGGCGAATGCTATTCGTGTGCTTTGTCGTATAA CAGACGGTGTCCTTCTGACTCAGATTGAGCGTTATCTGAAACAAGCAATTGTTGACAAAAATCCCGTAGTTGCTAGTGCTGCCCTTGTCAGTGGTTTCCT TTTGCTCCAGACAAATCCAGAGGTAGTGAAACGGTGGAGTAATGAGGTTCAAGAGGCTGTACAGTCAAGGGCTGCCCTCGTACAGTTCCATTCTCTGGCT TTGCTCCATCAGATACGTCAAAATGATCGTCTAGCCGTTAGCAAATTGGTTACCAGTTTGACCAGGGGAACTGTTCGTTCACCATTGGCTCAATGTCTTT TGATACGTTACACCAGTCAGGTAATTCGCGAGTCTGCTTCTAACTTGCAAACAGGTGATCGCCCGTTTTATGATTTTCTCGAAGGTTGCCTTCGCCACAA GGCTGAGATGGTCATTTTTGAGGCTGCTAGAGCAATCACAGAGCTTGCTGGTGTGACGAGTCGAGAACTGACTCCAGCAATTACTGTGCTACAGCTCTTT CTGAGCTCTTCCAAGCCAGTTTTGAGATTTGCTGCTGTTCGCACCTTGAACAAGGTTGCAATGACCCATCCAATGGCTGTTACCAATTGCAACATAGATA TGGAGAGCTTAATTTCGGACCAGAACAGAAGTATCGCCACACTTGCAATCACCACATTGTTGAAGACAGGAAATGAATCAAGTGTAGATCGTTTGATGAA GCAGATAACCAATTTCATGACTGACATTGCTGATGAATTTAAAATTGTTGTAGTGGAGGCCATCAGGTCTTTGTGCTTGAAGTTCCCTTTGAAATACCGA GCATTAGATATACCCGATGCAAAGGAAAGTGGATTGCTTCATTTGTGCGAGTTTATTGAAGACTGTGAATTTACTTATCTTTCAACTCAGATACTTCATT TTCTGGGGATTGAGGGCCCTAAGACTTCAGATCCCAGTAAATACATACGCTACATTTACAATCGTGTACATCTGGAGAATGCTACTGTTCGGGCTGCTGC TGTGAGCACGTTGGCAAAGTTTGGTGCTATGGTTGACTCGTTGAAGGTACAGTGTGTTGATCTTCATAGTGACTGGGTTGTCATTGTTGAAACTGATAAA GATGTGAAAGAGTTTCTCTTTGGAGCCTTGGATATCCCACTGGTCAACCTCGAGACAACTTTGAGAAATTATGAGGCTTCAGAAGAAGCTTTTGATATTA ACTCTGTTCCAAGAGAAGTGAAGCCTCAGCCACTTGCAGATAAGAAAGCTCCAGGCAAAAAGCAGCCAACTGGTTTGTGGGCTCCGCCAGCAGGCCCCCC TTCAACAGTGGATGCTTATGAAAAACTTCTTTCTTCAATTCCAGAGCTTGCTATTTTCGGGAAACCTTTCAAGTCCTCAGTACCTACAGAACTTACAGAG GCAGAAACAGAATATGCCGTCAATGTCGTAAAGCACATTTTTGATGGCCATGTCGTGTTCCAATATAACTGCACCAACACAATTCCGGAGCAGCTACTTG AAGATGTATCAGTGGCTGTTGATTCCTCCGAAGCAGAGGAATTCTCATTTGTATTATCCAGGTCGTTGAAGTCTCTTCCGTATGATATTCCTGGTCAAAC ATTTGTTGTATTTGAGAAGCCAAAGGGAGTGCCGGCGGTGGGGACGTTTTCTAACACGCTGAGATTCGTTGTGAAAGAGGTGGATCCAAGTACTGGAGAA GCCGATGAAGAGGGAGTTGAGGATGAGTACCAATTAGAGGAGCTGGAAGTTGAGCCGGCAGATTATATACAGAAAGTTGGAGTCTCTAACTTTAGGAACG CGTGGGAAAGCTTGGATGCTGAACTGGAGCGGGTGGATGAATATGGGCTTGGTCAAAAGGAGAATGTGGCTGAAGCTGTTAATGCGGTCATCACGCTTCT CGGAATGCAGCCCTGTGAGGGAACGGAGGTTGTTGCAAGCAATGCGAGGTCACACACATGTCTGCTATCTGGTGTGTTCATAGGGAATGTGAAGGTTCTT GCGAGGTTACAATTTGGAAAAATCGGTCTAAAGGACGTTGCGATGAAACTGACTGTGAGGTCTGAGAATATGGCTGTGAGTGATGCGATTCATGAAATTG TTTCGAGCGGCTAA
AA sequence Show only first row Show all	>Lus10042326 pacid=23153878 polypeptide=Lus10042326 locus=Lus10042326.g ID=Lus10042326.BGIv1.0 annot-version=v1.0 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSRDVGLRRMLYLMIKELSPS SDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGVLLTQIERYLKQAIVDKNPVVASAALVSGFLLLQTNPEVVKRWSNEVQEAVQSRAALVQFHSLA LLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESASNLQTGDRPFYDFLEGCLRHKAEMVIFEAARAITELAGVTSRELTPAITVLQLF LSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMTDIADEFKIVVVEAIRSLCLKFPLKYR ALDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDSLKVQCVDLHSDWVVIVETDK DVKEFLFGALDIPLVNLETTLRNYEASEEAFDINSVPREVKPQPLADKKAPGKKQPTGLWAPPAGPPSTVDAYEKLLSSIPELAIFGKPFKSSVPTELTE AETEYAVNVVKHIFDGHVVFQYNCTNTIPEQLLEDVSVAVDSSEAEEFSFVLSRSLKSLPYDIPGQTFVVFEKPKGVPAVGTFSNTLRFVVKEVDPSTGE ADEEGVEDEYQLEELEVEPADYIQKVGVSNFRNAWESLDAELERVDEYGLGQKENVAEAVNAVITLLGMQPCEGTEVVASNARSHTCLLSGVFIGNVKVL ARLQFGKIGLKDVAMKLTVRSENMAVSDAIHEIVSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	2.0	0.9537
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	2.4	0.9415
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	2.4	0.9465
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	3.2	0.9201
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	4.0	0.9376
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	6.2	0.9120
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10000030 [exp]	7.2	0.8703
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	7.3	0.9281
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	7.4	0.9321
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	9.5	0.9260

Compare expression of checked genes

Lus10042326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.