Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34440 502 / 1e-170 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 465 / 1e-156 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G49270 460 / 9e-154 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G24550 454 / 4e-152 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G18810 451 / 2e-150 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 426 / 5e-143 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 416 / 5e-139 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 407 / 6e-133 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 400 / 2e-130 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 394 / 3e-128 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026335 [exp] 637 / 0 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 506 / 3e-173 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10011098 [exp] 471 / 9e-159 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 468 / 1e-156 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 463 / 1e-156 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10043219 [exp] 463 / 8e-156 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 451 / 5e-155 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 454 / 5e-153 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014319 [exp] 404 / 3e-135 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115200 [exp] 491 / 2e-166 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 478 / 4e-161 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 474 / 1e-159 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 452 / 5e-152 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 450 / 1e-150 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 426 / 2e-142 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 424 / 2e-141 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 413 / 5e-135 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 411 / 1e-134 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 408 / 3e-133 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042327 pacid=23153693 polypeptide=Lus10042327 locus=Lus10042327.g ID=Lus10042327.BGIv1.0 annot-version=v1.0 ATGTCGAATAGTACGGCTCCTGCTCCTTCAGCTACATCACCACCGCCATCATCATCATCGAAACCTCCTCCACTGCCGAAACGCTCACCACCACCTCCAC CTGTAGAGAAGGCGCCAGCAAAGTCTCCCCCGCCGCCTGCGAAACCACCGCCCGAGAGGACCCCACCAGAAAATAATAACAAGAAATCACCGCCGGCACC ACAACAGCAGCAATTCATATCACCACCGGCGCCGGCGGGCAAGGATGATATTGTTGCACCTGCACCGCATAGGTCACATCCTCTGGCGCCGCCACGTAGC CACCCGAGTGGGGGTGGTAACGGCGGAGGAGGAAGCAACAACGATAATAATAATAATAATGGGGTGGTGGCGATTATAGTTGGTATAATTGTGGGTGCGG GTACGGTGATTTTGGTAGCCATGCTTCTTTATTTTTGCTTCAATCGGAAAAGGAAGCGGAAAGATGATGAACTCCCTTACTATGCACCCAGTAAAGCTCC TCCTGGCGGTTACTACATTGCTTCATCTTCTCCAGGTGTAATGGGAGGATACTACACTACTCCACAAAGTTGGCAAGTCAACAAAAACAACGACAACAAA CAAACAACAACAGAAGCACAACAACACAACATGACGAACGCCACAGCCGCCGCCGGAGGGCGTCCATGGACGCTATCTCCAACACCGTCACCACCACCAC CACCAATAACGACCGGCGCTGCAGGGGTCACCACATCGAGCGGCGAGTTCAGCACGTCGTTCTCAGTAGGGGTCCCACCACCAGCACCTCCACCGCCCTT TGTCGTCGGGAGCAACATGAGCAACAGTTTCGGCTACGAGGAGCTGAAGGCGGCCACCAACGGGTTCGCGCCATCGAACCTGTTGGGGCAAGGAGGGTTC GGTTACGTCCACAAAGGAGTGCTTAAAAACGGGAAAGAAGTTGCGGTGAAGAGCTTGAAAGCCGGGAGTGGTCAGGGGGACAGAGAGTTTCAGGCTGAGG TTGAGATTATCACTCGAGTTCATCACCGCCATCTTGTCACGCTGGTTGGGTATAGCATCGCCAATAGTCAGAAGTTGCTAGTTTACGAGTTTGTCCCTAA CTCTACACTTGAATTTCACCTTCATGGTAAGAATAGACCTACGATGGATTGGCCTACGCGGCTTAAGATCGCCGTTGGGGCCGCCAAGGGACTTGCTTAC CTGCATGAAGACTGCCATCCGCGTATTATCCATCGAGACATCAAAGCTGCAAATATTCTGCTCGACTTCAACTTCGACCCCAAGGTGGCAGATTTTGGAT TGGCTAAGCTGTCTCAGGACAACAATACACATGTATCAACTCGTGTCATGGGAACTTTTGGGTATCTGGCTCCAGAATACGCATCAAGCGGGAAGCTAAC AGATAAATCAGATGTTTTCTCCTTTGGAGTTGTCTTATTAGAGCTCATAACCGGCCGATGCCCTTTGGATAATAACGATTCCAACACGGACGACTCCTTA GTGGATTGGGCAAGACCTCTATGTTCAAAGGCACTGGAAGACGGCAACTGTCAAGCACTAGCCGACCCACGTCTAGAAGCCAATTACGTCCCGCAGGAGA TGAACCGGATGGTGGCGTGTGCTGCAAATGCTATAAGGCACTCCTCCAAGAAGCGCCCGAGGATGAGCCAGATTATGCGGACGTTAGAAGGGGACGCCCC GTTGGATCAATTGACAGACGGAGCCGCCAGTAGGGCTGCTGCTGCTGCTGCTTCAGGGCAGAGCGGCTCCTACTTTGGCGGCTCGGCGTCTTCGGATAAC TCGGATACCTCGTACAGTGCGGACATGAAGAAGTTTAGGAAGGCGGTGTTGGAGTACCAGAGTAGTGAATATGGGATGACGAGTGAGTACGGGCTCAACC CTTCTTCTTCTAGCGGCGAAGATATGTCCAGGAAGCACTAG
AA sequence Show only first row Show all	>Lus10042327 pacid=23153693 polypeptide=Lus10042327 locus=Lus10042327.g ID=Lus10042327.BGIv1.0 annot-version=v1.0 MSNSTAPAPSATSPPPSSSSKPPPLPKRSPPPPPVEKAPAKSPPPPAKPPPERTPPENNNKKSPPAPQQQQFISPPAPAGKDDIVAPAPHRSHPLAPPRS HPSGGGNGGGGSNNDNNNNNGVVAIIVGIIVGAGTVILVAMLLYFCFNRKRKRKDDELPYYAPSKAPPGGYYIASSSPGVMGGYYTTPQSWQVNKNNDNK QTTTEAQQHNMTNATAAAGGRPWTLSPTPSPPPPPITTGAAGVTTSSGEFSTSFSVGVPPPAPPPPFVVGSNMSNSFGYEELKAATNGFAPSNLLGQGGF GYVHKGVLKNGKEVAVKSLKAGSGQGDREFQAEVEIITRVHHRHLVTLVGYSIANSQKLLVYEFVPNSTLEFHLHGKNRPTMDWPTRLKIAVGAAKGLAY LHEDCHPRIIHRDIKAANILLDFNFDPKVADFGLAKLSQDNNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRCPLDNNDSNTDDSL VDWARPLCSKALEDGNCQALADPRLEANYVPQEMNRMVACAANAIRHSSKKRPRMSQIMRTLEGDAPLDQLTDGAASRAAAAAASGQSGSYFGGSASSDN SDTSYSADMKKFRKAVLEYQSSEYGMTSEYGLNPSSSSGEDMSRKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10042327 [exp]	0	1

Compare expression of checked genes

Lus10042327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.