Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18820 367 / 3e-131 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G49300 352 / 3e-125 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT3G16100 337 / 4e-119 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT1G52280 334 / 4e-118 AtRABG3d RAB GTPase homolog G3D (.1) AT4G09720 286 / 3e-99 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT1G22740 275 / 1e-94 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT2G21880 249 / 2e-84 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT5G39620 194 / 1e-62 AtRABG1 RAB GTPase homolog G1 (.1) AT5G59840 119 / 1e-33 Ras-related small GTP-binding family protein (.1) AT1G28550 118 / 4e-33 AtRABA1i RAB GTPase homolog A1I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040468 [exp] 388 / 3e-139 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10023582 [exp] 349 / 3e-124 AT3G18820 330 / 4e-117 RAB GTPase homolog G3F (.1) Lus10035872 [exp] 342 / 4e-121 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10028719 [exp] 283 / 3e-98 AT4G09720 341 / 5e-121 RAB GTPase homolog G3A (.1.2.3.4) Lus10006059 [exp] 269 / 1e-92 AT4G09720 323 / 4e-114 RAB GTPase homolog G3A (.1.2.3.4) Lus10025790 [exp] 172 / 2e-54 AT1G52280 257 / 5e-88 RAB GTPase homolog G3D (.1) Lus10005443 [exp] 119 / 3e-33 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10005890 [exp] 115 / 5e-32 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10004687 [exp] 115 / 5e-32 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153400 [exp] 382 / 3e-137 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.009G115000 [exp] 382 / 3e-137 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.003G053400 [exp] 323 / 9e-114 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.001G182900 [exp] 318 / 1e-111 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.002G062400 [exp] 291 / 6e-101 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G198800 [exp] 279 / 2e-96 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G085300 [exp] 254 / 2e-86 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.007G079700 [exp] 216 / 5e-72 AT4G09720 272 / 3e-94 RAB GTPase homolog G3A (.1.2.3.4) Potri.010G208900 [exp] 120 / 9e-34 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 119 / 3e-33 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10042328 pacid=23153478 polypeptide=Lus10042328 locus=Lus10042328.g ID=Lus10042328.BGIv1.0 annot-version=v1.0 ATGCCTTCCCGTCGAAGAACTCTCTTGAAGGTCATCATACTCGGCGACAGCGGAATTGCTTCCAGATATGTCAATAAGAAGTTTAGCAACCAATATAAGG CGACAATTGGAGCAGATTTTTTGACAAAGGAAGTTCAGTTTGAACATAGGCTCTTCACTTTACAGGTTCGTTGTAATACTGCCACAGCTCAGCTGATCTG GGATACTGCTGGACAGGAAAGATTTCAAAGCCTTGGTGTTGCATTCTACCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTCAATTCGATGAAATCA TTTGATAATCTCAATAACTGGAGGGAGGAATTCCTTATCCAGGCCAGTCCTTCAGATCCTGAGAATTTCCCATTTGTTGTTCTCGGTAACAAGATCGATG TTGATGGTGGGAACAGCAGAGTAGTTACAGAGAAAAAGGCTCGAGCATGGTGTGCGTCCAAGGGAAACATCCCATACTTTGAGACCTCTGCCAAAGAAGG CGTTAATGTAGAAGAAGCTTTCCAGGTCATAGCAAAGGATGCATTGGAGACCGGAGAAGAGGAAGAAATATACTTGCCAGAAACAATCGACGTTGGAAGC AGCAGTCAGCCAAGGTCCAGCGGTTGTGAATGCTAA
AA sequence Show only first row Show all	>Lus10042328 pacid=23153478 polypeptide=Lus10042328 locus=Lus10042328.g ID=Lus10042328.BGIv1.0 annot-version=v1.0 MPSRRRTLLKVIILGDSGIASRYVNKKFSNQYKATIGADFLTKEVQFEHRLFTLQVRCNTATAQLIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS FDNLNNWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVTEKKARAWCASKGNIPYFETSAKEGVNVEEAFQVIAKDALETGEEEEIYLPETIDVGS SSQPRSSGCEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	0	1
					Lus10040920 [exp]	2.2	0.9138
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	3.2	0.9415
AT4G38060			unknown protein		Lus10001865 [exp]	3.3	0.9074
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	4.2	0.9137
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	4.2	0.9214
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	4.5	0.8968
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	5.8	0.8848
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023011 [exp]	6.9	0.9022
					Lus10031246 [exp]	7.2	0.8778
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	7.3	0.8775

Compare expression of checked genes

Lus10042328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.