Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 67 / 6e-13 RNI-like superfamily protein (.1) AT1G69630 63 / 2e-11 F-box/RNI-like superfamily protein (.1) AT1G55030 61 / 4e-11 RNI-like superfamily protein (.1) AT5G02930 61 / 5e-11 F-box/RNI-like superfamily protein (.1) AT1G16930 61 / 6e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 61 / 9e-11 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G49040 60 / 1e-10 F-box/RNI-like superfamily protein (.1) AT4G03220 59 / 4e-10 Protein with RNI-like/FBD-like domains (.1) AT3G51530 58 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 58 / 8e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002239 [exp] 183 / 1e-56 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024695 [exp] 177 / 3e-54 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 177 / 4e-54 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10034161 [exp] 162 / 9e-49 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 157 / 2e-46 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 147 / 1e-42 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 142 / 6e-41 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 132 / 8e-37 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008502 [exp] 129 / 1e-35 AT5G44980 69 / 9e-13 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 76 / 4e-16 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 71 / 1e-14 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 71 / 2e-14 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 69 / 2e-13 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 63 / 1e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 61 / 4e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 61 / 7e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 60 / 1e-10 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 57 / 1e-09 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.015G002001 [exp] 56 / 4e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042331 pacid=23153862 polypeptide=Lus10042331 locus=Lus10042331.g ID=Lus10042331.BGIv1.0 annot-version=v1.0 ATGGTGAAAAACTCTATTGACAGGTTGAGCAATCTTCCAGACTCTATTCTTAATCACATTTTTTCATTCCTCGACACCAAATCTGTCGTTCAAACCTCAG TACTGTCCAAGCTATGGAAATGCACCTGGAAGCATGTCTCTCTTCTCAGATTCGATAGCTGCTCTTTTCGTTCATATTCGAACTTTGAAAGGTACGTGAA CAAGGTTTTGTCCCTACGCTCTTCGGTTAATCTGCGTGAGGTTACTTTGATTGATCGTGAAGACTCGAATCTACGACAAGGTAGCTTGTTTTTAAAGGTC TTAGAATATGCATTTTCCCGTGGTACTCAACATCTAACCATCGACCTGTATAATAAACACTTATGGGACGAAGCCGACTACTCGTTCTCTTATCTATTTG GCTCAACCGTTTCTCATCATTCCAATCTCAAGTCCTTAGAACTGGACGTGCTCTTCCTCGATGTTGGATTTCGATCTTCCGGTTTCCGGATGTTGAAGAA GCTAAAACTGGCCACGGCCGTGTTCACATCTGAAGACGAACAAGTCTTCGACTTCTTCTCCGAATTTCCATGTCTCGAGGATCTGACCTGGACGGTGTGC ATTGCAACGCCGCAACAGGGATAA
AA sequence Show only first row Show all	>Lus10042331 pacid=23153862 polypeptide=Lus10042331 locus=Lus10042331.g ID=Lus10042331.BGIv1.0 annot-version=v1.0 MVKNSIDRLSNLPDSILNHIFSFLDTKSVVQTSVLSKLWKCTWKHVSLLRFDSCSFRSYSNFERYVNKVLSLRSSVNLREVTLIDREDSNLRQGSLFLKV LEYAFSRGTQHLTIDLYNKHLWDEADYSFSYLFGSTVSHHSNLKSLELDVLFLDVGFRSSGFRMLKKLKLATAVFTSEDEQVFDFFSEFPCLEDLTWTVC IATPQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	0	1
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	6.8	0.8367
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	12.0	0.7757
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	12.9	0.8323
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10003654 [exp]	14.8	0.7345
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	15.2	0.8121
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	16.5	0.7966
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	17.2	0.8317
AT3G49601			unknown protein		Lus10034691 [exp]	20.7	0.7898
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	25.7	0.7474
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	27.7	0.7797

Compare expression of checked genes

Lus10042331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.