Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18140 572 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G22040 447 / 3e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 103 / 1e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 89 / 5e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 86 / 3e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G16750 82 / 4e-17 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 82 / 6e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 81 / 6e-17 WD-40 repeat family protein / notchless protein, putative (.1) AT1G11160 79 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 79 / 5e-16 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026332 [exp] 442 / 5e-158 AT2G22040 394 / 2e-139 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 102 / 1e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 99 / 9e-24 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 92 / 3e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 92 / 3e-21 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 89 / 1e-19 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 89 / 2e-19 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 83 / 3e-17 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039597 [exp] 81 / 1e-16 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G052800 [exp] 632 / 0 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 90 / 2e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 88 / 1e-19 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 87 / 1e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 85 / 4e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 84 / 8e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 79 / 2e-16 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.011G045500 [exp] 79 / 6e-16 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G250200 [exp] 77 / 1e-15 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.006G045800 [exp] 76 / 5e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042333 pacid=23154007 polypeptide=Lus10042333 locus=Lus10042333.g ID=Lus10042333.BGIv1.0 annot-version=v1.0 ATGACACAACCTTCGGTGATACTTGCAACTGCCAGCTATGATCACACGATCAGGTTCTGGGAAGCAAAGAGTGGTCGATGTTACCGCACAATTCAGTACC CTGATTCTCAAGTTAATAGGCTTGAGATAACACCGGATAAGCACTATCTTGCTACGGCTGGTAATCCTCATATTCGATTGTTTGATGTCAATTCAAACAG CCCTCAACCGGTGATGAGCTATGATTCACATACAAATAATGTCATGGCAGTGGGCTTTCAATGTGATGGCAACTGGATGTACTCAGGATCTGAAGATGGT ACTGTGAAAATTTGGGACTTGAGGGCTCCAGGTTGTCAGAGGGAATATGAGAGTCGTGCAGCTGTTAATTCCGTTGTGCTACATCCAAATCAGACAGAAC TGATATCTGGTGACCAGAATGGGAACATACGCGTTTGGGATCTGACAGCTAATGCATGCAGTTGTGAATTGGTCCCCGAGGTGGATACAGCCGTAAGGTC ACTAACTGTTATGTGGGACGGAAGCTTGGTAGTTGCAGCTAACAATAATGGAACATGTTACGTGTGGCGCTTGTTGCAAGGAACTCAAACGATGACGAGC TTTGAGCCCCTCCATAAGCTACAAGCACATAATGGATACATTCTCAAATGTCTATTGTCACCAGAGTTTTGTGAACCTCACAGATATCTGGCTACTGCAT CATCAGATCACACTGTCAAGATATGGAATGTAGATGGTTTCACTTTAGAAAAGACTTTAACTGGTCATCAACGCTGGGTATGGGACTGTGTTTTCTCTGT GGATGGTGCTTACCTGATAACAGCATCTTCTGATTCAACGGCGAGATTGTGGTCCATGTCAACTGGTGAAGACATCAGAGTGTATCAAGGACATCACAAA GCTACTATCTGTTGTGCTCTTCATGATGGAGCAGAGCCTTCTGCAACCTAA
AA sequence Show only first row Show all	>Lus10042333 pacid=23154007 polypeptide=Lus10042333 locus=Lus10042333.g ID=Lus10042333.BGIv1.0 annot-version=v1.0 MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKHYLATAGNPHIRLFDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDG TVKIWDLRAPGCQREYESRAAVNSVVLHPNQTELISGDQNGNIRVWDLTANACSCELVPEVDTAVRSLTVMWDGSLVVAANNNGTCYVWRLLQGTQTMTS FEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLTGHQRWVWDCVFSVDGAYLITASSDSTARLWSMSTGEDIRVYQGHHK ATICCALHDGAEPSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	0	1
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	3.5	0.8819
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	4.9	0.8775
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	4.9	0.8599
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	5.5	0.8641
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	7.3	0.8426
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	9.6	0.8787
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	10.7	0.8401
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	10.8	0.8584
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	11.0	0.8134
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	11.0	0.8482

Compare expression of checked genes

Lus10042333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.