Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 438 / 2e-151 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G45010 194 / 5e-56 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 190 / 2e-54 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 187 / 1e-53 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G52010 152 / 8e-41 SCPL37 serine carboxypeptidase-like 37 (.1) AT3G52000 146 / 1e-38 SCPL36 serine carboxypeptidase-like 36 (.1) AT1G73300 142 / 1e-37 SCPL2 serine carboxypeptidase-like 2 (.1) AT2G05850 141 / 8e-37 SCPL38 serine carboxypeptidase-like 38 (.1) AT1G73280 140 / 1e-36 SCPL3 serine carboxypeptidase-like 3 (.1) AT5G08260 135 / 6e-35 SCPL35 serine carboxypeptidase-like 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026331 [exp] 819 / 0 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 459 / 2e-159 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10037958 [exp] 194 / 6e-56 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 194 / 1e-55 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 181 / 6e-51 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 178 / 4e-50 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10018667 [exp] 154 / 5e-40 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10041352 [exp] 136 / 5e-35 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10016377 [exp] 134 / 5e-34 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060100 [exp] 548 / 0 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 521 / 0 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 515 / 0 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 199 / 6e-58 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 198 / 2e-57 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 184 / 3e-52 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.001G261100 [exp] 142 / 3e-37 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G055900 [exp] 139 / 7e-36 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.013G124900 [exp] 135 / 7e-35 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.009G056000 [exp] 134 / 4e-34 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10042334 pacid=23153727 polypeptide=Lus10042334 locus=Lus10042334.g ID=Lus10042334.BGIv1.0 annot-version=v1.0 ATGGCAACAAAATTTCAACTCTCCATCTCCTATCTCACAATAATTATCTCCTCATCTCTAAGTCCCCAATATTCCAAAGCTTCATCAGAATGCATCACAG GATTACCCAACAAAGCTCTCCCTACTAAATCAGGCTACCTCCCAGTCAACACAGCCACTAACCCATCAGCCATTTTCTACACATATTACAAAGCCCAGCA CCCCCCAAAATCCAAGAACCCCCCGATTCTATTCTGGCTCCAGGGCGGCCCCGGGTGCTCCTCCATGCTTGGAAACTTCTTCGAGCTCGGCCCTTACCGC GTCTCCGAATGTCAGGACGCGCAGGGTCGAAAGCGTGCCGTTCTGGAGCCCAATTCGGGTTCGTGGAACCGCATCTTCGACTTGGTGTTCCTCGATAACC CGATCGGAGCAGGTTTCAGCATTGTTTCGGACCCCAGAGAGATTCCTAAAGATCAGAATTCTGCAGCCAAGCATCTTTACGCTGCCATAACGGGGTTTCT GGGTTTGGAAACCGAGTTCAGGAACCGTCAGGTTTATATTTTAGGCGAGAGCTATGCTGGGAAGTTTGTTCCGTCGATTGGGTACTATATCCTGAAGCAG AACGAAAAGCTGACCGTTTCGGAACGGGTGAACCTGAAAGGAATCGGAATCGGGAATGGAATGACCGATCCTGTAATTCAAGTAACTACCCATGCCGCCA GCGCTTACTATCTCGGTTTGATAGACGAAAAGCAGAGGAATCGGATCGAGCAAGTTCAATCCAAGGCAGTTGAGTTCGTCGGAATGCAGAAATGGCGCAA GGCAACAAACTCAAGATCGAGAGTCGTCAGGATGGTAAAAAACCTGACAGGTTTGGCAACCGATTTTGACTTCACTAGGAAAAGGCCGTACAGGACGGAT CTGGTGGCTCGATTCCTCCGGTCGAAGGATGTGAAGAGGAAGCTCGGAGTGGCTAACGACTCGATCGAGTTCGTCGGATGCAACAGGACAATCAGGGCTG GTTTCAGGGAAGACGTGATGAAGAGTGCGAAGGGAAAAGTCGAGAAGCTGTTAAAGAGGATGAATTGTAAGGTGTTGCTGTATCAGGGGAGTTTGGATCT AAGGGATAGCGTCGTGTCGAGCGAGGCTTGGATTAAGACGATGAAATGGGATGGGATTCAGAAGTTTTTGATGGCTGAAAGGAGGATATGGAAGGTGAAG GGGGAGCTGGCTGGGTATGTTCAGAAGTCAGGGAAATTGAGCCATGTTGTGGTGTTGGGTGGTGGGCATATGGTGCCTGCTGATCAGAGTGTGAATTCGC AGTCTATGGTTGAGGATTGGGTGTTGGGGAAAGGGCTCTTTCCTGAAGAAGAAGAGGGTAAGGATTTGGCATCAGAATGA
AA sequence Show only first row Show all	>Lus10042334 pacid=23153727 polypeptide=Lus10042334 locus=Lus10042334.g ID=Lus10042334.BGIv1.0 annot-version=v1.0 MATKFQLSISYLTIIISSSLSPQYSKASSECITGLPNKALPTKSGYLPVNTATNPSAIFYTYYKAQHPPKSKNPPILFWLQGGPGCSSMLGNFFELGPYR VSECQDAQGRKRAVLEPNSGSWNRIFDLVFLDNPIGAGFSIVSDPREIPKDQNSAAKHLYAAITGFLGLETEFRNRQVYILGESYAGKFVPSIGYYILKQ NEKLTVSERVNLKGIGIGNGMTDPVIQVTTHAASAYYLGLIDEKQRNRIEQVQSKAVEFVGMQKWRKATNSRSRVVRMVKNLTGLATDFDFTRKRPYRTD LVARFLRSKDVKRKLGVANDSIEFVGCNRTIRAGFREDVMKSAKGKVEKLLKRMNCKVLLYQGSLDLRDSVVSSEAWIKTMKWDGIQKFLMAERRIWKVK GELAGYVQKSGKLSHVVVLGGGHMVPADQSVNSQSMVEDWVLGKGLFPEEEEGKDLASE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	0	1
					Lus10023649 [exp]	4.9	0.8540
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	6.5	0.7730
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	7.1	0.8841
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	8.5	0.8176
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	9.4	0.7938
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	12.0	0.7686
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	12.4	0.7989
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	15.5	0.7892
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	15.9	0.8440
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	16.4	0.7852

Compare expression of checked genes

Lus10042334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.