Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24190 88 / 4e-22 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G70060 87 / 1e-21 SNL4 SIN3-like 4 (.1) AT1G24200 82 / 4e-21 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G59890 84 / 9e-21 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 81 / 1e-19 SNL6 SIN3-like 6 (.1) AT5G15020 77 / 2e-18 SNL2 SIN3-like 2 (.1.2) AT3G01320 77 / 4e-18 SNL1 SIN3-like 1 (.1.2) AT1G24230 62 / 5e-13 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 57 / 6e-12 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24220 45 / 5e-07 paired amphipathic helix repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010729 [exp] 101 / 1e-26 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10013293 [exp] 94 / 4e-24 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 92 / 2e-23 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10014504 [exp] 79 / 1e-18 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10032181 [exp] 79 / 1e-18 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10029218 [exp] 67 / 2e-14 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 62 / 2e-13 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 50 / 5e-09 AT1G70060 130 / 2e-35 SIN3-like 4 (.1) Lus10034645 [exp] 42 / 3e-06 AT1G24190 107 / 1e-27 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 97 / 2e-25 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 92 / 2e-23 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 82 / 4e-20 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.005G008200 [exp] 42 / 1e-06 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat
Representative CDS sequence Show only first row Show all	>Lus10042336 pacid=23153823 polypeptide=Lus10042336 locus=Lus10042336.g ID=Lus10042336.BGIv1.0 annot-version=v1.0 ATGGATGATCATGGCTTCGACAATGCTTTTACTAGGTTCAAAGGTGATGATCACGTTTACAAAGCATTTTTAGATATATTGAACATGTACAGGAAGGAAC ACAAACCCATCGGAGAGGTCTATCAGGAGGTGACTGCACTTTTCAAAGACCACCAAGATCTGCTTCTGGAATTCTCTCACTTTTTGCCACCACCTCTCAG GCCGGTGATGTTCAACTCCAAACTCTCGAGGCAATCTTAA
AA sequence Show only first row Show all	>Lus10042336 pacid=23153823 polypeptide=Lus10042336 locus=Lus10042336.g ID=Lus10042336.BGIv1.0 annot-version=v1.0 MDDHGFDNAFTRFKGDDHVYKAFLDILNMYRKEHKPIGEVYQEVTALFKDHQDLLLEFSHFLPPPLRPVMFNSKLSRQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	1.0	0.9900
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	3.7	0.9602
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10026025 [exp]	4.2	0.8760
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	4.9	0.9786
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	6.0	0.9786
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	6.9	0.9219
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	6.9	0.9786
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	7.7	0.9786
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	8.5	0.9786
					Lus10032805 [exp]	9.2	0.9786

Compare expression of checked genes

Lus10042336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.