Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27550 96 / 2e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 74 / 4e-14 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G09170 72 / 1e-13 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G41310 69 / 1e-12 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 69 / 1e-12 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 69 / 2e-12 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT2G22610 67 / 8e-12 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G19330 63 / 1e-10 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT3G08720 60 / 1e-09 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 57 / 1e-08 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027086 [exp] 409 / 2e-138 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029914 [exp] 110 / 3e-26 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004487 [exp] 108 / 1e-25 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001306 [exp] 76 / 1e-14 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10036653 [exp] 74 / 3e-14 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10010054 [exp] 70 / 3e-14 AT3G08720 127 / 4e-35 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 74 / 4e-14 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10013714 [exp] 73 / 1e-13 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 73 / 1e-13 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031500 [exp] 114 / 4e-28 AT5G27550 378 / 7e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 96 / 3e-21 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 95 / 3e-21 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G436200 [exp] 74 / 3e-14 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 74 / 5e-14 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.012G073700 [exp] 68 / 2e-12 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G110600 [exp] 62 / 2e-10 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.008G150100 [exp] 62 / 3e-10 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 59 / 2e-09 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.016G138400 [exp] 53 / 1e-07 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042337 pacid=23153753 polypeptide=Lus10042337 locus=Lus10042337.g ID=Lus10042337.BGIv1.0 annot-version=v1.0 ATGGGTTATATGTTGCTGATTATATCATATCATGGGTCGTTTATTGATGACAACGACATAAAGCTCCAGGATTTAGCACCTCAGCTTAGAAATTTGCCCA CTATCAAGCAGATTCTGGATGATGTTGATTCCCAAACACTTGCATCTAGAGTTAACATCAGCTATTGTCCTGATGAGATTATACGTGCGGGTGGTGATAG GATTATCATTGAGGCAGTGAATGGGTTGCTTACTAAAGAGAACGAGAAAGAAGACATCTTCATTCCTATTGCAATTATACATGATTTCGGTGCAGCGAGA GTGGAAAGAGAGCTGAGCAGGTTGTCTATAGGATTCAAACTGCAAAGTTGTTGGAGTATTCTCATTGTTGCTGGAGTTGTGGCAGCCAATGGGAGCAATT CGAGTAGCGTTGCTGCTGAAATTTTATCTGTTTCACATTTCCATGATTGTTTTATGGTGCATCCAGATCTTGAGCCTGGAAATATTCTCTCGAGTGTCGA AGGATATGTTGAGCTAGTTGATTTTGCAAAGGAGATGGATGAATCCAGTAGGTTTAATTCAGTTTGTAGGACTGCTGAAGACAGGGCTTCGAAATATATA TTCTCTAACGGCTACAATATCAGCATATTTGCCTATGGCCAAGCTGTATCTGGCAAGACATTTACAATGGAAGGCGGCACACTTCACAATAGAGGAGTGA ACTACAGAACTGAGGAAGCACAGAAGCTGCTCAAATCTGGAAACTGCATACGATCTGTCGGTTCTACGAGTGCCAACGAGCAAAGCAGCCGCTCTCACTG TTTGTTACTAGTGACGGTCAAAGGAGGGAATTTGATCGAGGGGCAGAAAACAAGAAACCACCTTTGGCTTGTGGACTTAGCTAGAAGTAAGCGTGTTGAA ATTTGTTCAAACACGAAGCAACAACTCGATGGAACTATTGCTTTGTACAAGTTGGCCAACAAAGCAATTACACTTTCTCCTATGCATGCATTTCCACCTT CTCCAATTCTACATGTCTATTTGGGGAGCCGTGTGTGA
AA sequence Show only first row Show all	>Lus10042337 pacid=23153753 polypeptide=Lus10042337 locus=Lus10042337.g ID=Lus10042337.BGIv1.0 annot-version=v1.0 MGYMLLIISYHGSFIDDNDIKLQDLAPQLRNLPTIKQILDDVDSQTLASRVNISYCPDEIIRAGGDRIIIEAVNGLLTKENEKEDIFIPIAIIHDFGAAR VERELSRLSIGFKLQSCWSILIVAGVVAANGSNSSSVAAEILSVSHFHDCFMVHPDLEPGNILSSVEGYVELVDFAKEMDESSRFNSVCRTAEDRASKYI FSNGYNISIFAYGQAVSGKTFTMEGGTLHNRGVNYRTEEAQKLLKSGNCIRSVGSTSANEQSSRSHCLLLVTVKGGNLIEGQKTRNHLWLVDLARSKRVE ICSNTKQQLDGTIALYKLANKAITLSPMHAFPPSPILHVYLGSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41310			P-loop nucleoside triphosphate...		Lus10042337 [exp]	0	1

Compare expression of checked genes

Lus10042337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.