Plant FIBer expression Database

Lus10042338 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11755 149 / 1e-44 LEW1 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026330
[exp]
286 / 4e-98 AT1G11755 241 / 2e-79 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G152800
[exp]
207 / 9e-68 AT1G11755 258 / 2e-86 LEAF WILTING 1, Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10042338 pacid=23153691 polypeptide=Lus10042338 locus=Lus10042338.g ID=Lus10042338.BGIv1.0 annot-version=v1.0
ATGGGTGTCAAACAATTGTGTCTCTACGATGCGTTAGGAGTTCTTAAGAAGTCTAAAGATAAAATCGTAAGAATGTTGGATAATGCAGTTCTCTTAGAGG
AACTTGATAAAAAGGAGTTGCAGGAAGTTCCAAAATGTATGACCCTTGAATTTGCTTCGATGTCTGATGGAAAGGAAGCGGTAGCCAAGGCCGCGAACTT
GCTCTTTACCAAGTACAGGAAAGTTGCAAACTTGGACAAGCAGGATGAGCAGATTTTCACTGAAGCAAACATCACAGAGGCATTAAGAGCTGTAGGTTGC
ATGGGGCCAGAACCTGACCTGCTTTTAGTTTATGCACCAGTAAGATGCCATCTTGGTTTCCCTGCTTGGAGAACTCGGTACACAGAGATAGAGCATATGG
GATCATTGAAGTCCATGAAGCATGGCTCGCTAATAAAGGCCATTTACAGGTTCACTAGGATCAACTTATTGATCAAACACACCAAACCCTGTTGGATGCC
ATCATATAATGATTTGAGGGCTTTTGGACAGGGAAATGAGTTGGCTTGTCGTCACTGCAAAAGAGCAAGTAGGCATTTCCAGCAGAAGTTGGAGTCATGG
ATTTAG
AA sequence
>Lus10042338 pacid=23153691 polypeptide=Lus10042338 locus=Lus10042338.g ID=Lus10042338.BGIv1.0 annot-version=v1.0
MGVKQLCLYDALGVLKKSKDKIVRMLDNAVLLEELDKKELQEVPKCMTLEFASMSDGKEAVAKAANLLFTKYRKVANLDKQDEQIFTEANITEALRAVGC
MGPEPDLLLVYAPVRCHLGFPAWRTRYTEIEHMGSLKSMKHGSLIKAIYRFTRINLLIKHTKPCWMPSYNDLRAFGQGNELACRHCKRASRHFQQKLESW
I

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11755 LEW1 LEAF WILTING 1, Undecaprenyl p... Lus10042338
[exp]
0 1
AT1G31812 ACBP6, ACBP acyl-CoA-binding protein 6 (.1... Lus10021246
[exp]
1.0 0.8253
AT5G14710 unknown protein Lus10014543
[exp]
4.2 0.7904
AT1G67000 Protein kinase superfamily pro... Lus10026761
[exp]
8.7 0.7634
AT4G39630 unknown protein Lus10036631
[exp]
12.2 0.7336
AT2G37120 S1FA-like DNA-binding protein ... Lus10015073
[exp]
13.2 0.7562
AT4G38370 Phosphoglycerate mutase family... Lus10023935
[exp]
13.9 0.7606
AT2G33050 AtRLP26 receptor like protein 26 (.1) Lus10019693
[exp]
14.5 0.7825
AT5G14610 DEAD box RNA helicase family p... Lus10035149
[exp]
16.2 0.7613
AT1G11755 LEW1 LEAF WILTING 1, Undecaprenyl p... Lus10026330
[exp]
17.3 0.7750
AT4G27080 ATPDI7, ATPDIL5... ARABIDOPSIS THALIANA PROTEIN D... Lus10019611
[exp]
18.2 0.7386

Lus10042338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.