Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 726 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 684 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 679 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 587 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 555 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 468 / 5e-161 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 226 / 2e-67 ATINT1 inositol transporter 1 (.1) AT5G59250 211 / 3e-61 Major facilitator superfamily protein (.1) AT1G50310 206 / 9e-60 ATSTP9 sugar transporter 9 (.1) AT5G17010 205 / 2e-59 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011288 [exp] 872 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 869 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 811 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 723 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 722 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 697 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 608 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 557 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 556 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 819 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 790 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 780 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 588 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 508 / 4e-177 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 479 / 3e-165 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 454 / 2e-155 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 230 / 7e-69 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 229 / 1e-68 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 210 / 3e-61 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10042339 pacid=23153762 polypeptide=Lus10042339 locus=Lus10042339.g ID=Lus10042339.BGIv1.0 annot-version=v1.0 ATGGCAGGTCCCGATGCTGACAGCCAGACGGCGTCCTCTGCCCCCGCCGCCGCCGCGGAAAACAACAGTAAGTTGGCAGACTTTGAAACTCCGGCGAAAC CGAAAACTAACAAGTTCGCTTTTGCCTGTGCCATGTTGGCTTCCATGACTTCCATCTTACTCGGCTACGATATCGGAGTGATGAGCGGAGCCGCCATCTT CATCAAGGACGAATTCAAGATCTCGGACGTCAAAGTCGAGGTGCTGGTCGGAATGCTCAACATATACTCACTGATTGGCTCAGCCGCCGCCGGCAGAACC TCCGACTGGATCGGACGTCGGTACACCATCGTCGTCGCTGGCGCTATCTTCTTCGTCGGAGCACTCCTGATGGGATTCGCCACAAGCTATGCCTTCCTCA TGGTCGGCCGCTTCGTCGCCGGCATTGGCGTCGGCTACGCTCTCATGATTGCCCCTGTCTACACCGCCGAAGTCTCCCCTGCCTCCTCCCGCGGCTTCCT CACCTCTTTCCCCGAAGTTTTCATCAACGCCGGGATCTTATTTGGCTACGTTTCGAACTACGCGTTCTCGAAGCTGCCGCAGCATCTCGGATGGAGACTA ATGCTAGGAGTCGGCGCAATTCCGTCGGTGTTCCTCGCCGTCGGGGTATTAACGATGCCGGAATCGCCGAGGTGGGTAGTGATGCAAGGAAGACTCGGAG ACGCCAAGCGAGTTCTGGACAAAACCTCCGACACACCGGAAGAAGCGCAAGCCCGATTATCCGACATCAAAGGAGCAGCTGGAATCCCGGAGGACTGTAC CGACGACGTCGTTCAGGTGGCGAAACAGAGTCACGGAGAAGGCGTATGGAAGGAGCTTCTAATCCATCCAACTCCAGCCGTGCGCCACATACTAATATGC GCCGTGGGGATTCACTTCTTCCAGCAAGCGTCAGGAATAGACGCCGTCGTTTTGTACAGCCCGCGAATCTTCGAAAAGGTCGGGATCACGTCATCAGACA AGAAGCTACTCGCGACGATAGCCGTCGGATTCACCAAGACGGTCTTCATCTTGGTGGCTACTTTTTTGCTGGACAGGATCGGACGGCGGCCGTTGCTCCT GAGCAGCGTGGCCGGGATGATCCTTTCGCTGGTGACCCTTGGATGGAGCCTGGAGATCATAGATCACACGGCGCACAAAGTGAGTTGGGCCGTAGCGCTG TGCATCACGATGGTGTTGTCCTACGTGGCGTTCTTCTCGATTGGGATGGGGCCCATCACTTGGGTTTACAGCTCGGAGATTTTCCCGTTGAGGCTACGCG CTCAGGGGGCGAGTATGGGAGTGGCGGTGAACAGGGTGACGAGCGGGGTTATATCGACGACGTTTATATCTATGTACAAAGGGATGACTATCAGCGGGGC GTTCTTCTTGTTCGCAGGCATTGCGATGGTGGCGTTTGTGTTCTTTTTCAGCTGTTATCCGGAGACTCAAGGGAGGACGTTGGAGGATATGGAGGTGCTG TTTGGTAGCTTCTTCGGGTGGAGGTCTGTGGCTCTCGAGGTTGAGAAGTTGAAGGAGAAAGAGGGCAAGAATGGTAATATTACTAGTAACAATGGGGTTG AATTACGAAGTAAATAA
AA sequence Show only first row Show all	>Lus10042339 pacid=23153762 polypeptide=Lus10042339 locus=Lus10042339.g ID=Lus10042339.BGIv1.0 annot-version=v1.0 MAGPDADSQTASSAPAAAAENNSKLADFETPAKPKTNKFAFACAMLASMTSILLGYDIGVMSGAAIFIKDEFKISDVKVEVLVGMLNIYSLIGSAAAGRT SDWIGRRYTIVVAGAIFFVGALLMGFATSYAFLMVGRFVAGIGVGYALMIAPVYTAEVSPASSRGFLTSFPEVFINAGILFGYVSNYAFSKLPQHLGWRL MLGVGAIPSVFLAVGVLTMPESPRWVVMQGRLGDAKRVLDKTSDTPEEAQARLSDIKGAAGIPEDCTDDVVQVAKQSHGEGVWKELLIHPTPAVRHILIC AVGIHFFQQASGIDAVVLYSPRIFEKVGITSSDKKLLATIAVGFTKTVFILVATFLLDRIGRRPLLLSSVAGMILSLVTLGWSLEIIDHTAHKVSWAVAL CITMVLSYVAFFSIGMGPITWVYSSEIFPLRLRAQGASMGVAVNRVTSGVISTTFISMYKGMTISGAFFLFAGIAMVAFVFFFSCYPETQGRTLEDMEVL FGSFFGWRSVALEVEKLKEKEGKNGNITSNNGVELRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	1.0	0.8717
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	5.8	0.7681
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	6.5	0.7528
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	6.7	0.7537
					Lus10021106 [exp]	6.7	0.7234
					Lus10018645 [exp]	9.2	0.7349
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	10.2	0.7676
AT1G17080			Ribosomal protein L18ae family...		Lus10026193 [exp]	11.0	0.7119
AT3G27030			unknown protein		Lus10041550 [exp]	11.0	0.7563
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	11.0	0.7479

Compare expression of checked genes

Lus10042339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.