Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 603 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 601 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 510 / 0 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 74 / 8e-14 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 65 / 5e-11 XEG113 xyloglucanase 113 (.1) AT4G01750 51 / 6e-07 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G19970 50 / 2e-06 unknown protein AT4G01770 48 / 8e-06 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT5G40900 47 / 2e-05 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 44 / 0.0002 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026327 [exp] 875 / 0 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 622 / 0 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 615 / 0 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 63 / 8e-11 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 61 / 1e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 56 / 2e-08 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 51 / 1e-06 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 50 / 1e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 49 / 5e-06 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113300 [exp] 710 / 0 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 631 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 617 / 0 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 63 / 2e-10 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 58 / 7e-09 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G139800 [exp] 43 / 0.0004 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 43 / 0.0004 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G029200 [exp] 42 / 0.0004 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G166000 [exp] 42 / 0.0007 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.012G037300 [exp] 41 / 0.001 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10042340 pacid=23153570 polypeptide=Lus10042340 locus=Lus10042340.g ID=Lus10042340.BGIv1.0 annot-version=v1.0 ATGATGGGACGAAGAGAGGGGCCATTGATGAGGAATAACAGCACCGCCGCCTCCCTCGTCAAATCCAGAATCTCCGTTGCCGTTGCCCTCGGAATCTTAC TCGGCTGCGCATTCGCTGTCCTCTACCCTCACGGATTCTTCACTTCCGCTACTGCTTCTCGCATCAACACTTCTCTTTCCCAGGTGGTATCATCAGCCTC CTGCGAGCCGTCTGATAAGCTCAATGCTTTAAGAGCAGAGTTCGCTGAAGCATCGGAGAAAAACTTCGAGTTGCAAAAACAGGTAAAGGAGCTTACTTCA AAGCTCAGATATGCAGAACAAATCAAAAGCCAAGCAGAAATTCAAGTTGCTATATTGGGTCAGCAGCACAAAGCTGGACCATTTGGTACCGTCAAGGGAC TGAGAACAAACCTTGCAGTAAAACCGGAAAACCCGGACGAGTCAGTAAACCCGAGGCTGTCAAGTATACTAGAGAAAGTTTCCGTACAGAAAGAACTCAT AGTCACTTTAGCCAACTCGAACGTGAAGGAAATGCTGGAGGTTTGGTTCACCAGCATCAAGAAAGTTGGCATACCAAACTATTTAGTTGTTGCTCTGGAC GATGAGATCGCTCAGCTTTGCGAATCAAATGATGTTCCGTTCTACAAGAGAGATGCTGACGAAGGGGTTGATTCGGTAGGAAAGACTGGAGGCAACCATG CTGTTTCGGGCTTGAAATTCCAAATCTTGAGGGAGTTCTTGCAATTGGGTTATAGCGTTCTTCTCTCCGATGTTGATATCGTGTACCTGCAGAACCCGTT CGATCATCTGTACCGAGATTCCGATGTGGAGTCGATGACCGATGGACACAACAACATGACTGCGTACGGCTACAACGACGTGTTCGACGAGCCCTCGATG GGGTGGGCGAGGTACGCTCACACGATGCGAATTTGGGTTTACAACTCAGGATTCTTCTACATCAGACCAACCATTCCGTCGATCGAACTTTTAGATCGTG TGGCTTATCGGCTGGCCCACGAGACTGCATGGGATCAGGCGGTGTTCAACGAGGAACTGTTTTACCCGTCGCATCCTGGTTACGATGGACTTTATGCGTC GAGGAGGACAATGGATTTGTACCTTTTCATGAACAGCAAGGTTTTGTTCAAGACTGTCAGGAAAGATGGTAACTTGAGGAAGATGAAGCCGGTGATTGTT CATGTGAACTACCATCCGGATAAGCTTCCGAGAATGAAGGCTGTGGTTGAGTTCTATGTGAATGGGAACCAAGAAGCACTCAAGTCTTTTCCAGATGGAT CAGACAGGTGA
AA sequence Show only first row Show all	>Lus10042340 pacid=23153570 polypeptide=Lus10042340 locus=Lus10042340.g ID=Lus10042340.BGIv1.0 annot-version=v1.0 MMGRREGPLMRNNSTAASLVKSRISVAVALGILLGCAFAVLYPHGFFTSATASRINTSLSQVVSSASCEPSDKLNALRAEFAEASEKNFELQKQVKELTS KLRYAEQIKSQAEIQVAILGQQHKAGPFGTVKGLRTNLAVKPENPDESVNPRLSSILEKVSVQKELIVTLANSNVKEMLEVWFTSIKKVGIPNYLVVALD DEIAQLCESNDVPFYKRDADEGVDSVGKTGGNHAVSGLKFQILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMTDGHNNMTAYGYNDVFDEPSM GWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVAYRLAHETAWDQAVFNEELFYPSHPGYDGLYASRRTMDLYLFMNSKVLFKTVRKDGNLRKMKPVIV HVNYHPDKLPRMKAVVEFYVNGNQEALKSFPDGSDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	0	1
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10028719 [exp]	1.4	0.9346
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	4.9	0.9360
AT5G57330			Galactose mutarotase-like supe...		Lus10020015 [exp]	5.3	0.9037
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	6.3	0.9116
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	6.9	0.9334
					Lus10026715 [exp]	7.0	0.9220
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	8.1	0.9177
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	8.7	0.9303
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	9.9	0.8814
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	11.7	0.9214

Compare expression of checked genes

Lus10042340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.