Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18870 276 / 2e-92 Mitochondrial transcription termination factor family protein (.1) AT2G34620 144 / 1e-40 Mitochondrial transcription termination factor family protein (.1) AT2G03050 136 / 4e-38 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 114 / 3e-29 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT5G55580 87 / 6e-19 Mitochondrial transcription termination factor family protein (.1) AT1G78930 86 / 2e-18 Mitochondrial transcription termination factor family protein (.1) AT2G21710 81 / 9e-17 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G02990 78 / 7e-16 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT4G14605 76 / 3e-15 Mitochondrial transcription termination factor family protein (.1) AT2G44020 74 / 1e-14 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026325 [exp] 595 / 0 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 146 / 4e-41 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 137 / 4e-38 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 129 / 2e-34 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 123 / 2e-32 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 119 / 4e-31 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 117 / 2e-30 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10030451 [exp] 113 / 5e-29 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 109 / 2e-27 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150600 [exp] 309 / 2e-105 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 159 / 1e-46 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 136 / 2e-37 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.016G072200 [exp] 136 / 2e-37 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.010G167400 [exp] 114 / 1e-29 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 92 / 2e-20 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 90 / 7e-20 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 84 / 4e-18 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 80 / 1e-16 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.017G067600 [exp] 77 / 1e-15 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10042342 pacid=23153782 polypeptide=Lus10042342 locus=Lus10042342.g ID=Lus10042342.BGIv1.0 annot-version=v1.0 ATGCTACACTCACTAACTATCCAAGCTTCCTCCATAACCAGAACCTTCACCAAACACCCATCAATACCTACTCCATCTCTACACCCTCCCCTTCACATCA ACTTCCAAACTACCCGCCTAGAACATCTCCGATACCTCAAATCCGTCGGCGTGGTTCGCCCCGACACCAAACTCCACAAGCTCCCCTCCCCGGACGCCAT CTCCCACATCCTCTCCACCGTAAACTTCTTCAAATCCAAAGGCTTCTCCAACCCCGACTTCCCCAGGCTCGTCTCCGTTTGCCCCGAAATCTTCTCCCCC AACTTCGATGTCTCCGACATTCAACCCGTGTTCAAGTTCCTCGCCATGGATTTGGGTGCCTTGCCCCACCAATCTTGCGGCCTGATCGCCAATTGCCCCG AGATCCTCCTCACTGATGTGGAGTACTGCCTGAGGCCGACGCTGGACTATCTCAGGCATATTGGGGTTGAGAATTTGAACGCTCCTACAATCCTCAACGC TAACCTTTTGAACGTTCGAATCAGGAAGTTGCAGTCGAAGGTGATGTTTCTGAGGAGCATTGGGTTTTCGGAGGAGGAAGCTGAGAAATGCTGTGCGAGG TTGCCTGCCATATTGAAGTACAGCGTTGAGAATAATATGAAGAGGAAGTACGTGTACCTGGTGAAGGAGATGGGGCGGAGCGTGGAGGAGTTGAAGGAGT TTCCTCAGTATTTCGGGTTTAGCCTCGAAACGAGGATACACCCGAGGCATCTGCATCTGAAAGCCATGAATGTTAAGGCGAAGCTGGATAGAATGTTGAA ATGTAGTGACGAGAATTTCTACTACCGTTTTTGGGAGAAACCTGGCCTTGCTGGGCGCAACAAATCCAGACATTCTAAGAGGATGAATCCGAGAGGAGAA AAACGCATTTCGACCAATGCTCCGAGTCTAACACTCTGA
AA sequence Show only first row Show all	>Lus10042342 pacid=23153782 polypeptide=Lus10042342 locus=Lus10042342.g ID=Lus10042342.BGIv1.0 annot-version=v1.0 MLHSLTIQASSITRTFTKHPSIPTPSLHPPLHINFQTTRLEHLRYLKSVGVVRPDTKLHKLPSPDAISHILSTVNFFKSKGFSNPDFPRLVSVCPEIFSP NFDVSDIQPVFKFLAMDLGALPHQSCGLIANCPEILLTDVEYCLRPTLDYLRHIGVENLNAPTILNANLLNVRIRKLQSKVMFLRSIGFSEEEAEKCCAR LPAILKYSVENNMKRKYVYLVKEMGRSVEELKEFPQYFGFSLETRIHPRHLHLKAMNVKAKLDRMLKCSDENFYYRFWEKPGLAGRNKSRHSKRMNPRGE KRISTNAPSLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18870			Mitochondrial transcription te...		Lus10042342 [exp]	0	1
AT2G03420			unknown protein		Lus10036810 [exp]	3.6	0.9302
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	4.7	0.9143
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	7.7	0.9134
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	17.3	0.9079
AT2G24060			Translation initiation factor ...		Lus10036595 [exp]	17.3	0.8554
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	17.7	0.9020
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	19.5	0.8983
AT3G17930			unknown protein		Lus10026379 [exp]	19.6	0.9037
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	20.1	0.9081
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	20.1	0.8707

Compare expression of checked genes

Lus10042342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.