Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 473 / 9e-165 MATE efflux family protein (.1) AT5G38030 446 / 1e-153 MATE efflux family protein (.1) AT3G26590 442 / 5e-152 MATE efflux family protein (.1) AT1G12950 433 / 2e-148 RSH2 root hair specific 2 (.1) AT4G00350 422 / 8e-144 MATE efflux family protein (.1) AT1G23300 405 / 2e-137 MATE efflux family protein (.1) AT4G25640 396 / 3e-134 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 381 / 3e-128 MATE efflux family protein (.1) AT3G21690 376 / 3e-126 MATE efflux family protein (.1) AT1G61890 371 / 2e-124 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026323 [exp] 638 / 0 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 638 / 0 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 473 / 2e-164 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 461 / 6e-160 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 452 / 1e-155 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 451 / 3e-155 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 421 / 1e-143 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 418 / 8e-143 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10038850 [exp] 414 / 3e-141 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 462 / 1e-159 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 442 / 5e-152 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 427 / 3e-146 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 416 / 1e-141 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.007G010200 [exp] 406 / 2e-138 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 398 / 6e-135 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 395 / 4e-134 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G161200 [exp] 384 / 1e-130 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 375 / 5e-126 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 375 / 5e-126 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042343 pacid=23153931 polypeptide=Lus10042343 locus=Lus10042343.g ID=Lus10042343.BGIv1.0 annot-version=v1.0 ATGATGTGGGAAATAGCAGCACCAGTCATGCTAAGTGCAGTAGCTCAATTCTCTCTCGGCTTCATCACCTCCGCTTTCGTCGGCCGCTTGGGAGAAGTCC AGCTCGCCGCCGTCTCCATCGTTCAGAACGTCCTCCAAGTCTTTGTCTTTGGAATCATGCTCGGAATGGCGAGCGCGCTGGAGACACTATGCGGGCAAGC AGTAGGAGGAGGCCAATTCAACATGCTAGGAATCTACTTGCAGAGGTCATGGATCATAACAATAGTTACAGGACTACCCCTGGTGCCCCTCTACGTATTT GCATCCCCTGTTCTGAAGCTACTCCGTCAGGACCACGAAATCTCGCAACTCGCGGGGAAATTCTCGGTGTGGGTTCTGCCTCAGCTATTCGCTGTGGCAC TGGGCTTACCCATCCAGAAATTCCTGCAGTCTCAGAGTAAAGTGTGGGTGGTAACCGCGATCTCCGTCCTTGTTCTGCCCATTCACGTGTTGATGAATTG GGTCCTGATCACCAAACTCGGACACGGCATTGTTGGTGCAGCCATAGCAGGGAATTTGTCGTGGTTGATCATAGTTGTGGCTCAGTTGGCGTATGTGATC TGTGGGTTCTTCCCGGAAGCTTGGACTGGATTCTCGTTCAAGGCTTTCGAGTCGCTCTCCGGATTCGTCAAGCTCTCCCTTTCCTCTGCCGTAATGCTAT GTTTGGAGCTTTGGTACACTACGATATTGATCCTGATGGTTGGGTGGTTGAAGAACCCAGAGATTGCTGTTGATGCAGTTTCCATTTGTTTGAATGTGCA GATATGGACTCTAATGATTGCATTGGGTTTCAACGCGGCAATAAGCGTAAGGGTATCGAACGAGCTAGGAGGTGGGAACCCGAAGGCCGCAAAGCACTCA GTAAAAGTGACCATCGCAACGTCGACAATAATAGGAATCGTATGCGCAGCCGCAATCCTAGCGGCGAAAAACGAGTTCCCAAAGATATTCACCGAAAAGG ACAAAGTGATAGAGGAAGCATCGAAACTGGGCTATTTCTTAGCGGCATCAGTGTTCCTCAACGGAATCCAGCCGGTGCTACACGGCGTGGCGGTGGGGGC TGGGTGGCAGCATCAAGTGGCGTGGATAAACGTGGTGTGCTATTACGCATTCGGGCTCCCCATAGGGGCGGTGTTGGGTTACAAGTTGGATTCGGGAGTG GAAGGAATATGGGGTGGGATGTTGGTTGGTTACCTGCTCCAAGTCGTCGTGCTTCTCTGCGTCATTCACCGCACCAACTGGCATCAGGAAGCTTTGGATG CGGAAGGACGTGTTCGAAGCTATGGCGGCGGCACTTGTGATGCTACCCCTCAAGGAACTCCATTGCAACCCATTCAGAATGTTTCACATTGA
AA sequence Show only first row Show all	>Lus10042343 pacid=23153931 polypeptide=Lus10042343 locus=Lus10042343.g ID=Lus10042343.BGIv1.0 annot-version=v1.0 MMWEIAAPVMLSAVAQFSLGFITSAFVGRLGEVQLAAVSIVQNVLQVFVFGIMLGMASALETLCGQAVGGGQFNMLGIYLQRSWIITIVTGLPLVPLYVF ASPVLKLLRQDHEISQLAGKFSVWVLPQLFAVALGLPIQKFLQSQSKVWVVTAISVLVLPIHVLMNWVLITKLGHGIVGAAIAGNLSWLIIVVAQLAYVI CGFFPEAWTGFSFKAFESLSGFVKLSLSSAVMLCLELWYTTILILMVGWLKNPEIAVDAVSICLNVQIWTLMIALGFNAAISVRVSNELGGGNPKAAKHS VKVTIATSTIIGIVCAAAILAAKNEFPKIFTEKDKVIEEASKLGYFLAASVFLNGIQPVLHGVAVGAGWQHQVAWINVVCYYAFGLPIGAVLGYKLDSGV EGIWGGMLVGYLLQVVVLLCVIHRTNWHQEALDAEGRVRSYGGGTCDATPQGTPLQPIQNVSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	3.7	0.9806
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	3.7	0.9782
AT1G11655			unknown protein		Lus10020050 [exp]	4.6	0.9739
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	7.1	0.9777
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	9.6	0.9752
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	10.1	0.9746
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	10.2	0.9603
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	10.4	0.9725
					Lus10011724 [exp]	10.5	0.9751
AT3G16070			unknown protein		Lus10034910 [exp]	12.0	0.9618

Compare expression of checked genes

Lus10042343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.