Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 521 / 0 MATE efflux family protein (.1) AT3G26590 487 / 3e-169 MATE efflux family protein (.1) AT5G38030 469 / 4e-162 MATE efflux family protein (.1) AT1G12950 466 / 9e-161 RSH2 root hair specific 2 (.1) AT1G23300 462 / 2e-159 MATE efflux family protein (.1) AT4G00350 450 / 4e-154 MATE efflux family protein (.1) AT4G25640 423 / 2e-144 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G61890 412 / 6e-140 MATE efflux family protein (.1) AT1G11670 406 / 2e-137 MATE efflux family protein (.1) AT3G21690 398 / 3e-134 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026323 [exp] 985 / 0 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042343 [exp] 639 / 0 AT1G47530 486 / 8e-170 MATE efflux family protein (.1) Lus10042130 [exp] 502 / 2e-175 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 502 / 9e-175 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 498 / 3e-173 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 486 / 2e-169 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 471 / 6e-163 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 469 / 6e-162 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 453 / 4e-156 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 511 / 2e-178 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 476 / 8e-165 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 454 / 2e-156 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 453 / 1e-155 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G102100 [exp] 432 / 1e-147 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 422 / 6e-144 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 420 / 4e-143 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G161200 [exp] 417 / 5e-143 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 418 / 5e-142 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 413 / 3e-140 AT3G21690 656 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042344 pacid=23153857 polypeptide=Lus10042344 locus=Lus10042344.g ID=Lus10042344.BGIv1.0 annot-version=v1.0 ATGGAGATGGAATTGTCCTCTGTTCCTCCTGCAGTTAGGACAATATCTCCGAAACCCAGTTCCAGGATGTGGTGGGTGGAGTCCAAGAACATGTGGGAAA TAGCTGCCCCTGCTATGATCACAGAGGTCTCCCAATTTTCTATCAGCTTCATCACCGCTGCATTCGTCGGCCATTTGGGCGCGGTCGAGCTAGCTGCTGT CTCCATCGTTCAGAATGTCCTTGAAACTTTTGTCTTTGGGTTCATGTTGGGGATGGGGAGTGCCCTAGAGACGTTATGTGGCCAAGCAGTGGGAGCAGGA CAACTGGACATGCTTGGAGTATATATGCAAAGATCATGGATTATAAGCATGGTTACAGCTTTCTGCCTTGCTCCAGTCTACGCATTGGCATCCCCAATCT TGAAGCTTCTTCATCAAGACAAGCATATCTCCGAACTCGCTGGCAAATTCGCGATATGGGTTATGCCACAATTGTTCCTCTACGCCCTCAATTTCCCCTT GCAGAAATTCCTTCAAGCCCAGAGTAAAGTCTGGGTCTTGACCACCATTTCTGCAGTGGTTCTGGGAATTCATGCTCTTCTCAATTGGGTTTTCGTTACT AAGCTTGGATATGGGATTGTTGGAGCAGCCATTGTAGCTGACTTCTCTTGGCTGCTGGTGGTTCTTGGTCAGATTATATATGTGGTTTCTGGATATTTCC CTCAGGCTTGGACTGGGTTTTCATGGAAGGCTTTTAAGTCTCTTGGTGGCTTTGTCAAGTTGTCACTTGCTTCTGCAATCATGTTGTGCTTGGAGCTGTG GTACACCACGGTGGTTATTCTCATGGTTGGATGGTTGAAGAACCCTGAAATCGCGGTTGATGCCATCTCGATCTGCATGAACATCCAGCTCTGGACTTTG ATGGTTGCATTGGGATTCAATGCAGCAATAAGTGTGCGAGTATCGAACGAACTCGGAGCAGGAAATCACAAAGCTGCGAAATTCTCGGTGAAGTTGACCA TTGCAACATCAACAGTAATAGGAGCAATATTCACAGGGATAGTTCTAGCTACAAAGGATGAGTTCCCAAAGCTCTTCACTAAAAACCCTGTGGTGATAAA TGAGGCCTCAAAGCTTGGCAACTTCTTAGCAGCCACAGTCTTCCTTAACAGCATCCTGCCGGTGCTCCATGGAGTGGCAGTTGGAGCAGGATGGCAGTTC CAGGTTGCAGTGATAAACATAGTGTGTTACTATGTCTTTGGGCTGCCAATAGGAGCAGTGCTGGGTTACAAGTACGACCTTGGTGTGAAAGGAATATGGT CAGGAATGTTGATTGGCTACTGTCTCCAGATTGTCTTCCTACTATACATTATCTACAAAACCAACTGGCAGAAAGAGGCGTCAGATGCGGAGGAGCGGGT TAGAAACTGGGGAGGGAATTCTGAGCCGAAGCAGATTGGTCCATCAGCAGAAGAAGAAGCAATAAGAGCTAATGGCTTGAAAGAAGGAGAAACTTTGATA AGTTGA
AA sequence Show only first row Show all	>Lus10042344 pacid=23153857 polypeptide=Lus10042344 locus=Lus10042344.g ID=Lus10042344.BGIv1.0 annot-version=v1.0 MEMELSSVPPAVRTISPKPSSRMWWVESKNMWEIAAPAMITEVSQFSISFITAAFVGHLGAVELAAVSIVQNVLETFVFGFMLGMGSALETLCGQAVGAG QLDMLGVYMQRSWIISMVTAFCLAPVYALASPILKLLHQDKHISELAGKFAIWVMPQLFLYALNFPLQKFLQAQSKVWVLTTISAVVLGIHALLNWVFVT KLGYGIVGAAIVADFSWLLVVLGQIIYVVSGYFPQAWTGFSWKAFKSLGGFVKLSLASAIMLCLELWYTTVVILMVGWLKNPEIAVDAISICMNIQLWTL MVALGFNAAISVRVSNELGAGNHKAAKFSVKLTIATSTVIGAIFTGIVLATKDEFPKLFTKNPVVINEASKLGNFLAATVFLNSILPVLHGVAVGAGWQF QVAVINIVCYYVFGLPIGAVLGYKYDLGVKGIWSGMLIGYCLQIVFLLYIIYKTNWQKEASDAEERVRNWGGNSEPKQIGPSAEEEAIRANGLKEGETLI S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	1.0	0.9899
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	1.4	0.9844
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	5.5	0.9782
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	6.0	0.9676
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	6.5	0.9746
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	6.7	0.9802
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	8.4	0.9762
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	8.7	0.9796
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	12.4	0.9781
AT2G42910			Phosphoribosyltransferase fami...		Lus10007345 [exp]	13.4	0.9724

Compare expression of checked genes

Lus10042344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.