Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 713 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026322 [exp] 885 / 0 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10040509 [exp] 784 / 0 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10011310 [exp] 781 / 0 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10009762 [exp] 176 / 4e-53 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 773 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.009G111569 [exp] 773 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.004G150400 [exp] 705 / 0 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02401 [flax] [poplar] LYTB LytB protein
Representative CDS sequence Show only first row Show all	>Lus10042345 pacid=23153601 polypeptide=Lus10042345 locus=Lus10042345.g ID=Lus10042345.BGIv1.0 annot-version=v1.0 ATGGCGATCTCTTTCCAATTCTCCCGATTCTCCTTTCGCGCTGATCAATTCACATCTCAACATCGTGGAGCTTTTAGGCGCCCAAGGACTCCAGTAGCTT CCGTCCAATGCTCTGGTGGTGGAGATGAATCCGCTGCCGGCTCCTTGGCTGTGGAATCCAACTTCGACTCCAAGGTGTTTAGGCACAACTTGACCAGGAG TAAGAATTACAATCGCCGAGGGTTTGGACATAAGGAGGAGACTCTCCAGCTCATGAACCAAGAATATACCAGTGACATCATAAAGACTCTGAAGGATAAC GGATACCAGTACACTTGGGGAAATGTTACGGTTAAGCTAGCTGAAGCTTTTGGCTTTTGCTGGGGAGTTGAACGAGCTGTCCAGATTGCGTATGAAGCTA GGAAACAGTTTCCCGATGAGAAGATTTGGATCACCAACGAGATTATTCACAATCCAACTGTTAATAAGCGTTTGGAGGATATGGAAGTTGCAAACATTCC TATTGAGGAAGGGGAGAAACAGTTTGAAGTTGTGAACAATGGAGATGTGGTAATTTTGCCAGCTTTTGGGGCATCAGTTGATGAGATGTTGACACTCAGC AACAAAAGCGTGCAAATCGTCGATACTACGTGCCCTTGGGTGTCTAAGGTTTGGAACATTGTTGATAAACATAAGAAGGGGGATTATACTTCAATCATCC ATGGGAAATATACCCATGAGGAAACTGTTGCAACTGCTTCTTTCGCTGGAAAATATATCATCGTCAAGGATATCAAAGAGGCAACATACGTGTGTGATTA TATTCTTGAAGGACAACTCAATGGATCTAGCTCAACCAGAGAGGAGTTTCTAGAGAAATTTAAGTATGCAGTTTCTGAGGGATTTGATCCTGATAGAGAC CTTGTTAAAGTTGGTATTGCAAACCAAACTACAATGCTCAAGGGAGAAACCGAAGAAATTGGAAAATTAGCGGAGAGGACGATGATGCAGAAGTATGGGG TTGAAAACGAGAGACAAGACGCCATGTACAAAATGGTGGACGAAAAATTGGACCTTATTCTAGTGGTAGGTGGATGGAACTCGAGCAACACATCGCATCT TCAAGAAATCGCCGAGCACCGTGGGATCCCTTCATACTGGATTGACAGTGAGCAGAGAATAGGTCCAGGAAACAAGATAGCCTACAAGTTAAACCATGGG GAGTTGGTGGAGAAAGAGAAGTGGTTACCAGAAGGACCGATTACCATTGGGATAACATCTGGTGCTTCCACCCCAGATAAGGTGGTGGAGGATGTTCTGA CCAAGGTTTTCGACATCAAGCGCGAGGAAGCGTTGCAGATGGCGTAG
AA sequence Show only first row Show all	>Lus10042345 pacid=23153601 polypeptide=Lus10042345 locus=Lus10042345.g ID=Lus10042345.BGIv1.0 annot-version=v1.0 MAISFQFSRFSFRADQFTSQHRGAFRRPRTPVASVQCSGGGDESAAGSLAVESNFDSKVFRHNLTRSKNYNRRGFGHKEETLQLMNQEYTSDIIKTLKDN GYQYTWGNVTVKLAEAFGFCWGVERAVQIAYEARKQFPDEKIWITNEIIHNPTVNKRLEDMEVANIPIEEGEKQFEVVNNGDVVILPAFGASVDEMLTLS NKSVQIVDTTCPWVSKVWNIVDKHKKGDYTSIIHGKYTHEETVATASFAGKYIIVKDIKEATYVCDYILEGQLNGSSSTREEFLEKFKYAVSEGFDPDRD LVKVGIANQTTMLKGETEEIGKLAERTMMQKYGVENERQDAMYKMVDEKLDLILVVGGWNSSNTSHLQEIAEHRGIPSYWIDSEQRIGPGNKIAYKLNHG ELVEKEKWLPEGPITIGITSGASTPDKVVEDVLTKVFDIKREEALQMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	0	1
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	1.4	0.9568
AT5G20935			unknown protein		Lus10013382 [exp]	2.0	0.9472
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	2.4	0.9437
AT5G61820			unknown protein		Lus10004249 [exp]	3.0	0.9402
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	3.2	0.9447
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	3.5	0.9493
AT1G44920			unknown protein		Lus10007720 [exp]	3.6	0.9331
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	4.2	0.9294
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	4.2	0.9505
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	4.5	0.9270

Compare expression of checked genes

Lus10042345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.