Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18890 434 / 2e-145 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 129 / 1e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G31530 74 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46780 73 / 2e-13 PTAC16 plastid transcriptionally active 16 (.1) AT2G37660 69 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 66 / 7e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 51 / 1e-06 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026321 [exp] 942 / 0 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 124 / 3e-31 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 120 / 4e-30 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040768 [exp] 86 / 2e-17 AT3G46780 540 / 0.0 plastid transcriptionally active 16 (.1) Lus10016502 [exp] 84 / 6e-17 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10022420 [exp] 72 / 3e-13 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 70 / 5e-13 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010846 [exp] 68 / 3e-12 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 68 / 4e-12 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124404 [exp] 531 / 0 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 531 / 0 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 496 / 2e-171 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 117 / 4e-29 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G037000 [exp] 92 / 1e-19 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.001G244800 [exp] 88 / 4e-18 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.001G253900 [exp] 74 / 4e-14 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 67 / 9e-12 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G204900 [exp] 53 / 5e-07 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10042346 pacid=23153687 polypeptide=Lus10042346 locus=Lus10042346.g ID=Lus10042346.BGIv1.0 annot-version=v1.0 ATGGATGCTTGCAATCTTCATTCATCCACCATTCCCACCTCTTTTAACAAGATTATTACTCCCGCCAAAACTTTTTCCCTTGCTCAGTCAGTCTCTCTTC CTAATTTGAACAAGTACCCTCATCCTGCAAAGTTCAGAATCCACAACACCAAAGTTAAAGCTTCAGGTAGGGTTTCAGCCCCCTCTTGCATTTCCTTTCT CTTTGAGGTTAAGAACTTGGTAGTGAAATCGGGTACGCTAAGAATCAGGGCGGTGGCAGTTGAGGCAGGTAATGAAGGAGATGTGAAGAGTGAAAATGTA GCTTTTGTGGCAGGTGCTACTGGTAAAGTTGGCTCTCGGACAGTAAGGGAGCTAGTCAAATTGGGGTTCCAAGTTAGAGCTGGTGTCAGGAGTGCTCAAA GAGCTCAAAGTCTTGTCCAGAGTGTGAAGCAAATGAGACTTGATGATGAGGGTTCTCAAGCCACGGACCGACTTCAACTAGTGGAATGTGATTTGGAGAA GCCGGACCAGATTGTACCGGCATTAGGCAATGCATCTGTGGTTCTATGCTGCATTGGAGCGAGTGAGAAGGAAGTTCTTGACATCACAGGTCCATACCGG ATTGATTTCCAAGCTACAAAGAACCTCATCGATGCAGCGATTGTGGCTAAAGTTGATCACTTTATCATGGTCTCCTCATTGGGGACGAACAAAATCGGAT TCCCAGCTGCAATCCTGAACTTGTTCTGGGGAGTCCTCATATGGAAGAGGAAGGCAGAAGAAGCACTGATAGCTAGTGGTCTTCCTTACACTATAGTCAG ACCTGGAGGAATGGAACGGCCAACTGATGCTTACAAGGAGACCCATAACGTTACCCTTTCAACTGAAGACACTTTATTTGGGGGTCAGGTTTCGAATCTT CAGGTGGCAGAACTGATAGCATTCATGGCTAGAAATCAGGGGCTTTCATATTGTAAAGTGGTTGAAGTGATAGCAGAAACAACTGCACCATTAACTCCTT TTGATAAACTTCTCGAAAAGATACCATCTCAACGAGTTAAACCAAAGAAACCAGATGCATCTCCTACATCTCAGCCTACTACTTTAGAGAAGAAGCTGGA GAAGGTGGCAACAACTTATCCTCCAGAAGTGAAATCTCCCGAACCAGAGCCTGCACAGACAAGGCCACTCTCACCTTACTCTGCGTACGATGATTTGAAG CCACCTACTTCTCCTAGTCCATCAGCTCCTAGCATCCCCAAGGTTCCATCCGAACCTGCTAGTGCAGAATCTGCCTCGGTAGGAGCAAAAGCATCAAGCT TTCTTTCTCCATATGCTGCCTATGAGGATCTGAAACCACCTAGCTCCCCATGTCCAACACCGCCCATAAGTTCCAAACCATCTGAGCCTGCACTGCCAGT TGAACCAGCAGGGGGAAATGATGTACCAAAGGTTGTCGCTAGTAACATCGATGTCGGACAAAGCGTAGAGGAAAAAGTTGTTAACTCGTACCGATCACCA TACTATGTATATGATGAATTCAAGCCACCGGCATCACCATCTCCGACTCCGCCATCTACCATGAAAGGAGGAGCAACTCAGGAGAAAGACACAATACCTC CTCCACCACCACCAGCAGCAGCAGAAATGAATGAGCAGCACAAGGAGCATAAAGAGAAGGAGGAGGAGAAACCAAGGCCTCTTTCGCCTTATTTCATGTA TGAAGATATGAAGCCTCCAACATCCCCGTCACCTGTCAAATCGGCAGCAAAATGA
AA sequence Show only first row Show all	>Lus10042346 pacid=23153687 polypeptide=Lus10042346 locus=Lus10042346.g ID=Lus10042346.BGIv1.0 annot-version=v1.0 MDACNLHSSTIPTSFNKIITPAKTFSLAQSVSLPNLNKYPHPAKFRIHNTKVKASGRVSAPSCISFLFEVKNLVVKSGTLRIRAVAVEAGNEGDVKSENV AFVAGATGKVGSRTVRELVKLGFQVRAGVRSAQRAQSLVQSVKQMRLDDEGSQATDRLQLVECDLEKPDQIVPALGNASVVLCCIGASEKEVLDITGPYR IDFQATKNLIDAAIVAKVDHFIMVSSLGTNKIGFPAAILNLFWGVLIWKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNL QVAELIAFMARNQGLSYCKVVEVIAETTAPLTPFDKLLEKIPSQRVKPKKPDASPTSQPTTLEKKLEKVATTYPPEVKSPEPEPAQTRPLSPYSAYDDLK PPTSPSPSAPSIPKVPSEPASAESASVGAKASSFLSPYAAYEDLKPPSSPCPTPPISSKPSEPALPVEPAGGNDVPKVVASNIDVGQSVEEKVVNSYRSP YYVYDEFKPPASPSPTPPSTMKGGATQEKDTIPPPPPPAAAEMNEQHKEHKEKEEEKPRPLSPYFMYEDMKPPTSPSPVKSAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	0	1
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	1.0	0.9702
AT2G01755			unknown protein		Lus10005230 [exp]	2.8	0.9516
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	3.9	0.9511
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	4.0	0.9395
AT2G36145			unknown protein		Lus10022687 [exp]	4.0	0.9502
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	4.5	0.9466
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	5.9	0.9406
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	6.0	0.9431
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10009619 [exp]	6.0	0.9224
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	7.2	0.9187

Compare expression of checked genes

Lus10042346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.