Plant FIBer expression Database

Lus10042347 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51010 108 / 9e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026320
[exp]
292 / 7e-102 AT3G51010 176 / 2e-56 unknown protein
Lus10041795
[exp]
263 / 3e-90 AT3G51010 175 / 5e-56 unknown protein
Lus10028346
[exp]
243 / 1e-82 AT3G51010 172 / 7e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018300
[exp]
106 / 2e-29 AT3G51010 94 / 6e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10042347 pacid=23153454 polypeptide=Lus10042347 locus=Lus10042347.g ID=Lus10042347.BGIv1.0 annot-version=v1.0
ATGGGATTTGGAGCTTTGAGAAGCATCGTTCGGCCGCTGGCCAGAACTCTCACGTCCGGTGCCTCAACTTCCTACTCGACATCCTTGCTGGGAAAAGCTC
CGTTTCCTTCATCCGAGTTGCGGCGATTGGATCTCACCCCTCAGGCTCCACCAGTTTCCCAGCTATTGCGCCATTTCAGTTTCTTCTCGGAGTCTGGTTA
CGATAGTTTGACCGACACCAGGTTGCCAAAGCGCCGCCCCCTCGACAAACCTCGTCGGAAAAGAGCTGGATTGAGACCTTCTGATGTGATATCACTGTGC
AATGCAGGAGCATTTGCTTGGGTGAAGTATGATGCTGGAGAGCCTATTAAACCCAGTAACCCTAATAAAGGAAGTGTGAAGCAAAGGAATGAGAAGAAAC
GTAGAATGTTGCACCGGGAATTCGTAAAGTCCGAGGCGAAGAAGAGGAAAGCACTGTTGCAGGCGGCTAATAGGAGGAAAATGGCGGCGAGAGTGGACCG
CAAAATGGCAGCTGTGGCTAGGGATAGAGCATGGGCAGAAAGACTGGCTGAACTGCAGCGGCTTGAAGAGGAAAAGAAAAACTCAACAGCTTAA
AA sequence
>Lus10042347 pacid=23153454 polypeptide=Lus10042347 locus=Lus10042347.g ID=Lus10042347.BGIv1.0 annot-version=v1.0
MGFGALRSIVRPLARTLTSGASTSYSTSLLGKAPFPSSELRRLDLTPQAPPVSQLLRHFSFFSESGYDSLTDTRLPKRRPLDKPRRKRAGLRPSDVISLC
NAGAFAWVKYDAGEPIKPSNPNKGSVKQRNEKKRRMLHREFVKSEAKKRKALLQAANRRKMAARVDRKMAAVARDRAWAERLAELQRLEEEKKNSTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51010 unknown protein Lus10042347
[exp]
0 1
AT2G03880 REME1 required for efficiency of mit... Lus10001617
[exp]
3.2 0.9321
AT5G64670 Ribosomal protein L18e/L15 sup... Lus10023078
[exp]
3.3 0.9429
AT4G15770 RNA binding (.1) Lus10037509
[exp]
4.9 0.9327
AT3G09630 Ribosomal protein L4/L1 family... Lus10014431
[exp]
6.6 0.9394
AT5G14050 Transducin/WD40 repeat-like su... Lus10036236
[exp]
8.8 0.9175
AT1G07780 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6... Lus10007494
[exp]
9.8 0.8701
AT4G28210 EMB1923 embryo defective 1923 (.1) Lus10033723
[exp]
10.1 0.9135
AT4G24830 arginosuccinate synthase famil... Lus10030725
[exp]
10.8 0.8645
AT1G80480 PTAC17 plastid transcriptionally acti... Lus10018172
[exp]
11.7 0.8817
AT1G23290 RPL27A, RPL27AB RIBOSOMAL PROTEIN L27A, Riboso... Lus10004617
[exp]
13.4 0.9287

Lus10042347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.