Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34370 828 / 0 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G16090 820 / 0 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 652 / 0 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT3G27720 482 / 5e-166 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT2G31770 229 / 2e-67 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 223 / 9e-66 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G05890 214 / 4e-62 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31510 211 / 8e-61 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT2G31780 206 / 5e-60 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G65430 196 / 6e-55 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026319 [exp] 1182 / 0 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10040508 [exp] 866 / 0 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 848 / 0 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026856 [exp] 208 / 2e-59 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 206 / 2e-59 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 190 / 5e-53 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 187 / 8e-52 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 176 / 3e-47 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10004569 [exp] 66 / 6e-11 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124304 [exp] 890 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 890 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G032000 [exp] 214 / 1e-61 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 211 / 1e-60 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.007G126900 [exp] 209 / 5e-60 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.010G180600 [exp] 209 / 7e-60 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 200 / 2e-56 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 192 / 3e-53 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.001G139400 [exp] 66 / 5e-11 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.003G187700 [exp] 63 / 1e-10 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10042348 pacid=23153747 polypeptide=Lus10042348 locus=Lus10042348.g ID=Lus10042348.BGIv1.0 annot-version=v1.0 ATGGAAGATTACGGAGCGAGCGACGAGGAGAACTACTATTCCGATGTCGATCAGGAGGAGTCACTGGATGGTTTTGAAAACGAGGATTCCGCTGTCCCGA GTTCGCGGTGCAAGGATTCCACATCGAAGGTGATAACGAAAGAGTCTCTATTTGCTGCACAGACAGAGGACTTACGAAGAGTGATGGAGTTGCTGTCTGT TAGAGAACACCATGCTCGCACTCTGTTGATCTACTACCGTTGGGATGTAGAGAAGTTATTTTCTGTGCTGGTAGAAAGGGGGAAAGCGCACTTGTTTACA GAAGCAGGTGTTATGGTGGATGCTCATCGAAATAACAATAATTACCAGTGTTCATCTTCGACGGTGACTTGTGAAATATGCATGGAGGAAGTGCGGGCCA ATATGTCCACAAGGATTGACTGTGGTCATTGCTTTTGCAACGATTGCTGGACCGAACATTTTATTGTGAAAATAAATGAAGGCCAGAGCAGGCGTATCAG ATGTATGGCATTCAAATGCAATGCCATATGTGATGAAGCTGTTGTCAGAAATCTGGTTGAAAAAAGTCATCCCGATCTAGCAGAGAAATTTGAGCGCTTT CTTTTAGAGTCATATATCGAGGATAATAAAATGGTGAAATGGTGCCCCAGTGCTCCACATTGTGGGAATGCTATAAGAATTGAGGAAGATGAGGTCTGTG AAGTGCAATGCTCCTGCGGTTTACAGTTTTGTTTCAGTTGCTTGTCCACGGCGCACTCACCTTGCTCATGTGTGATGTGGGAGCTTTGGACTAAGAAGTG CCGTGATGAATCTGAAACTGTTAATTGGATGACAGTTCATACAAAGCCTTGTCCAAAGTGTCACAAACCAGTTGAGAAAAATGGTGGCTGCAACCTTGTG AGCTGTGTCTGTGGGCAAGCATTTTGCTGGCTGTGTGGTGGAGCTACTGGCAGAGACCATACATGGACTCGAATTGCTGGTCATAGTTGTGGTCGTTATA AAGAGGACGCAAAGGAAAAAACTGAAAGGGCTAAACGGGATCTCTATCGGTATATGCACTATCATAACCGGTACAAAGCTCACAAGGATTCATTTAAGCT TGAGAATAAACTCGAGCAGACCATTAAAGAGAGGGTGTCAATTTCAGAGCAGAGGGATTCAACAATACGAGACTTCAGCTGGGTAACGAATGGTGTAAAC AGACTTTTCAGATCAAGGCGGGTTCTTACTTACTCATACGCTTTTGCGTTTTATATGTTTGGGGAAGAATTATTCAATGGCGAGATGACAAAGGAAGAGA GAGAAATAAAACAGAATCTATTTGAAGATCAGCAGCAACAGCTGGAGTCAGTGGTTGAGAACTTGTCGAAGCTTCTGGAAGAGCCATTTGACCAGTACAT TGATGATAAAATAATGGAGATACGTATGCAGGTCATCAATCTATCTGTTATGACAGATACCCGTTGTAAGAAAATGTACGAGTGCATCGAGAATGATTTA TTGGGTTCTCTTCAATTGGGCACTCATAATATTGCTCCATACAAGTCAAAGGGCGTGGAGAAGGCATCAGAACTCTCCACTTGTTCGAGCACTAGAGCCA GTGATGCTAGTACGGACGTCCCACCAGATGTCATATCAAGTGGTGGGACATCGAAACGGGACAGGCCATCAGTGTCAGGAAGCTCAAACGAAAGTGAAAA ATGCTCATTGCAGAAGCGGGCAAGGAAGGAGGTGAGCGGATTCTTTGATCTAAATATGCCGGCAGACTTGATTGAAAGGAACTGA
AA sequence Show only first row Show all	>Lus10042348 pacid=23153747 polypeptide=Lus10042348 locus=Lus10042348.g ID=Lus10042348.BGIv1.0 annot-version=v1.0 MEDYGASDEENYYSDVDQEESLDGFENEDSAVPSSRCKDSTSKVITKESLFAAQTEDLRRVMELLSVREHHARTLLIYYRWDVEKLFSVLVERGKAHLFT EAGVMVDAHRNNNNYQCSSSTVTCEICMEEVRANMSTRIDCGHCFCNDCWTEHFIVKINEGQSRRIRCMAFKCNAICDEAVVRNLVEKSHPDLAEKFERF LLESYIEDNKMVKWCPSAPHCGNAIRIEEDEVCEVQCSCGLQFCFSCLSTAHSPCSCVMWELWTKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLV SCVCGQAFCWLCGGATGRDHTWTRIAGHSCGRYKEDAKEKTERAKRDLYRYMHYHNRYKAHKDSFKLENKLEQTIKERVSISEQRDSTIRDFSWVTNGVN RLFRSRRVLTYSYAFAFYMFGEELFNGEMTKEEREIKQNLFEDQQQQLESVVENLSKLLEEPFDQYIDDKIMEIRMQVINLSVMTDTRCKKMYECIENDL LGSLQLGTHNIAPYKSKGVEKASELSTCSSTRASDASTDVPPDVISSGGTSKRDRPSVSGSSNESEKCSLQKRARKEVSGFFDLNMPADLIERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	4.7	0.9057
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	6.0	0.9088
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	13.0	0.8882
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	17.1	0.8714
AT4G30790			unknown protein		Lus10005509 [exp]	18.4	0.8936
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	19.7	0.8550
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	20.5	0.8864
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	21.0	0.8569
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	21.0	0.8892
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	21.6	0.8497

Compare expression of checked genes

Lus10042348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.