Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57800 249 / 3e-79 bHLH bHLH060 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42300 226 / 2e-71 bHLH bHLH048 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G07340 133 / 1e-34 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 127 / 3e-33 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G48560 128 / 1e-32 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 126 / 4e-32 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 123 / 1e-31 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 122 / 2e-31 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G10120 120 / 2e-30 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 116 / 5e-30 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011307 [exp] 328 / 3e-110 AT3G57800 291 / 3e-96 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10040506 [exp] 323 / 1e-108 AT3G57800 275 / 3e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10026318 [exp] 180 / 2e-50 AT3G57790 669 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036659 [exp] 127 / 7e-34 AT5G62610 256 / 3e-85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 124 / 2e-32 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10029110 [exp] 127 / 4e-32 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 127 / 4e-32 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 123 / 4e-32 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10003172 [exp] 122 / 2e-31 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057200 [exp] 325 / 8e-110 AT3G57800 280 / 2e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G051100 [exp] 325 / 2e-109 AT3G57800 305 / 8e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G156000 [exp] 135 / 2e-35 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 130 / 1e-33 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.002G248500 [exp] 129 / 6e-33 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G121850 [exp] 127 / 6e-33 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G136100 [exp] 129 / 1e-32 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G148900 [exp] 126 / 9e-32 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 125 / 2e-31 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.010G040000 [exp] 117 / 1e-30 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042349 pacid=23153678 polypeptide=Lus10042349 locus=Lus10042349.g ID=Lus10042349.BGIv1.0 annot-version=v1.0 ATGGAACAGCTGCTATCAGCTGCACCCGATGCTAGATCCAACGAAACTGCTCTTGATTCCGTCCAATTTGGGGATGATATCCGCCACTTAATCACCGCCC CGACTGAAAATTCGAGCTCCTTCACCGCTCTCCTCGGTTTGCCGCCCAATCAGGCCATGGAGCTACTCCACTCGCCGCCTGATTCTACCTTCAAGACCTC ACCCGACGGCCCCAAGCTGTACCAACCGCCTCACCACTTCAATGCCGACTTGCTCACCTTCCCCGCCAACGCCGCCTTGAACATTTCGCCCGAGACCAAC TCGAATTCCAGAGCGAAGCTGATGCAGAAGACCGTGAAGGGCGAACCGGCAGATACTGTATCTTACCTGATCAATTCGTCGCAGCCGTTGGCTTCCGATT CAACTGTCGTAGATAATCAGAGGCCGGGTGCAAAGAGGAAGGAGAGAGAAAAGAAGGGAAGAAGTTTCTCCAAGAAGAGCAAATGCGATAAATCCGAAGA CGGAGAGAAGCTCCCATTCGTTCATGTTCGAGCTCGTCGCGGTCAAGCTACGGATAATCACAGTTTAGCAGAGAGAGCGAGGAGAGAGAAGATCAACGCC AGGATGAAGCTCCTTCAAGAGTTGGTCCCCGGCTGCAGCAAGAGCTGTAGGCATTCCCTGGAACTTAATACTACCATTACTTGTAAGTTGGAACTGATTT CTGAATCCCAAACTAAGTGTACAAAGTTGTGTATGCAGATCTCTGGTACAGCACTCGTACTGGATGAAATCATTAACCATGTCCAGTCCTTGCAACGCCA AGTGGAGGTATTGTCAATGGAACTTTCAGCGGTGAACCCCAGAATAGATTTCAATATGGATAGTATGATGGCTGTTGCAAGTGGATCTCTAATGGATAGC AACTTCCCAGCTGTAATGATGCCTATTATGTGGCCAGAAATACAAGAAAATGGGAGCAGACAACAGTATCAACAGCAATGGAATTCAGATGCAGTTCACC AGCCAACTTGGGGGAAAGAAGATGGCCACAGCAACTTCATGAGTCGAGAGAACTCGCTGTTGAGTTACGTCTCCTCGGCAAATTCAGGTAGAAATGAGTT CATTTTGCCATTAGTTGCATCAATGAGTACTGGAATGAAGATCTGTACTTATTAA
AA sequence Show only first row Show all	>Lus10042349 pacid=23153678 polypeptide=Lus10042349 locus=Lus10042349.g ID=Lus10042349.BGIv1.0 annot-version=v1.0 MEQLLSAAPDARSNETALDSVQFGDDIRHLITAPTENSSSFTALLGLPPNQAMELLHSPPDSTFKTSPDGPKLYQPPHHFNADLLTFPANAALNISPETN SNSRAKLMQKTVKGEPADTVSYLINSSQPLASDSTVVDNQRPGAKRKEREKKGRSFSKKSKCDKSEDGEKLPFVHVRARRGQATDNHSLAERARREKINA RMKLLQELVPGCSKSCRHSLELNTTITCKLELISESQTKCTKLCMQISGTALVLDEIINHVQSLQRQVEVLSMELSAVNPRIDFNMDSMMAVASGSLMDS NFPAVMMPIMWPEIQENGSRQQYQQQWNSDAVHQPTWGKEDGHSNFMSRENSLLSYVSSANSGRNEFILPLVASMSTGMKICTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10042349 [exp]	0	1
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	3.7	0.9180
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	7.9	0.9139
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	9.6	0.9121
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	11.5	0.9114
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	12.0	0.9016
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	12.2	0.9101
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	16.3	0.8779
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	17.2	0.9040
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	17.9	0.9058
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	20.3	0.8269

Compare expression of checked genes

Lus10042349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.