Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57790 507 / 1e-178 Pectin lyase-like superfamily protein (.1) AT4G33440 116 / 2e-28 Pectin lyase-like superfamily protein (.1) AT5G41870 112 / 4e-27 Pectin lyase-like superfamily protein (.1) AT4G23820 109 / 4e-26 Pectin lyase-like superfamily protein (.1) AT3G62110 106 / 5e-25 Pectin lyase-like superfamily protein (.1) AT3G48950 100 / 8e-23 Pectin lyase-like superfamily protein (.1) AT2G23900 100 / 1e-22 Pectin lyase-like superfamily protein (.1) AT3G61490 96 / 2e-21 Pectin lyase-like superfamily protein (.1.2.3) AT1G19170 96 / 3e-21 Pectin lyase-like superfamily protein (.1) AT3G42950 93 / 3e-20 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026318 [exp] 717 / 0 AT3G57790 669 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 109 / 7e-26 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 107 / 3e-25 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 107 / 4e-25 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 106 / 7e-25 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 105 / 1e-24 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 104 / 4e-24 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 103 / 4e-24 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039909 [exp] 96 / 2e-21 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051200 [exp] 558 / 0 AT3G57790 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 124 / 3e-31 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 116 / 2e-28 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 109 / 6e-26 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 106 / 5e-25 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 106 / 6e-25 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 105 / 2e-24 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G139500 [exp] 104 / 3e-24 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 99 / 2e-22 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G062700 [exp] 99 / 2e-22 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10042350 pacid=23153711 polypeptide=Lus10042350 locus=Lus10042350.g ID=Lus10042350.BGIv1.0 annot-version=v1.0 ATGCCAACTCTGCTTCTCTACTCCATCATCCTCCATTTCATCCTTCCCGCCACTTCTTCATCATCTTCACTCCCTCCAGCAATCCAGCTCCCTCACCCGC CCTCCCCTACCACCGCCGTCTACGTCACTGACTATGGCGCCACCGGCGACGGAGCTCACTACGACACATACGCCATCCAATCCGCAATCGACTCTTGCTC TCCTTCCTCCTGCTCCTCCTCCACCTGCTACGTCACCTTCCCGCCGGGAACCTACCTAACCGCCACCATCCACCTCAAGTCAAACGTCATCCTCGATATC CAACCCGGCGCAGTCCTATTGGGCGGTCCAAGGGTTGAGGACTACCCCAAGCAGTCCAGCAGGTGGTATGTGGTCCTGGCGGAGAACTGCACGGACGTCG GGATCACCGGCGGGGGGAGTGTCGACGGCAATGGCCCCATGTTTGTTGAGAGGTACAACAGTGTGAAGAACGTGATGGTGAGCTGGAACGCCACTGGCGA TTGTTTGGGGGACGAGTGCCGCCCTCGATTGGTTGGTTTCCTTGGCTGCACTAACGTCCGCGTCTGGAATGTTAACTTCACCCAGCCCGCTTACTGGTGC TTTCACCTGGTAAGGTGCAGCAACTCTCTAATCCATGATGTTTCTATATACGGCGACTTCAACACACCTAACAACGATGGGATCGACATTGAAGATTCGA ATAATACAGTCATTACACGATGCCACATTGACACGGGAGATGACGCCATTTGTCCCAAGACATACACAGGGCCCCTCTATAACTTGACTGTAACCGATTG TTGGATTCAAACAAAATCTTCAGCTATCAAGCTTGGGAGTGCTAGTTGGTTTGACTTTAAAGGGCTGGTCTTTGACAACATCACCATCGTGGATTCGCAT AGAGGACTTGGATTTCAGATACGAGATGGAGGTTGCAAAGGTGGCAAGCTCAGCAACTTGAGGTTCACAAACGTGAAGCTGACGTACAGAAGGTGGACAA ATTTCAAAGGTGGGTTGGTGGATTACCGACCCGGATGCCAGGGGCTTGTGAAGCATGGCGCTGCAGGGATGATAATGGAACACGTCCAAGGCCTGGAGGT TGAGAATGTGAGCATGACATGGTCCGGTGGTGAAGTTGCTGAAGAAGAATGGGATAACCCTCTTGAGTTTAGACCTTCTACCGTTAACAACGTCTCTTTC CTCAATTTTCATTCGGGGATGTACTACGACGCCGCACTGTGA
AA sequence Show only first row Show all	>Lus10042350 pacid=23153711 polypeptide=Lus10042350 locus=Lus10042350.g ID=Lus10042350.BGIv1.0 annot-version=v1.0 MPTLLLYSIILHFILPATSSSSSLPPAIQLPHPPSPTTAVYVTDYGATGDGAHYDTYAIQSAIDSCSPSSCSSSTCYVTFPPGTYLTATIHLKSNVILDI QPGAVLLGGPRVEDYPKQSSRWYVVLAENCTDVGITGGGSVDGNGPMFVERYNSVKNVMVSWNATGDCLGDECRPRLVGFLGCTNVRVWNVNFTQPAYWC FHLVRCSNSLIHDVSIYGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTVTDCWIQTKSSAIKLGSASWFDFKGLVFDNITIVDSH RGLGFQIRDGGCKGGKLSNLRFTNVKLTYRRWTNFKGGLVDYRPGCQGLVKHGAAGMIMEHVQGLEVENVSMTWSGGEVAEEEWDNPLEFRPSTVNNVSF LNFHSGMYYDAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57790			Pectin lyase-like superfamily ...		Lus10042350 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10014103 [exp]	28.6	0.7302
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004178 [exp]	129.8	0.6906
					Lus10008695 [exp]	134.7	0.7269
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	162.2	0.7286

Compare expression of checked genes

Lus10042350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.