Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42310 170 / 4e-56 unknown protein AT3G57785 164 / 7e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026317 [exp] 233 / 2e-79 AT2G42310 173 / 1e-55 unknown protein Lus10011305 [exp] 199 / 1e-67 AT2G42310 164 / 1e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051400 [exp] 178 / 2e-59 AT2G42310 169 / 5e-56 unknown protein Potri.006G056900 [exp] 173 / 2e-57 AT3G57785 156 / 6e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042351 pacid=23153559 polypeptide=Lus10042351 locus=Lus10042351.g ID=Lus10042351.BGIv1.0 annot-version=v1.0 ATGCCTACGCTGCAACTTTTCAAGTCGGCGTCCACCATGCTCCGCCAACGGCTGGCCGGATCTCTCCGCACCCGCGGCGGCCACTCCGGACCTAGCCCAT GGGTAACCCCAGGCCACGAGGAGCGTCCCAAGGGCTACCTATTCAGCCGGACTCCGCCGCCGCCTGGACAGTCCCGCAAGTGGGAGGACTGGGAGCTTCC TTGCTACATCACCAGCTTCCTCACCATCGTCATCCTCGGCGTCGGCCTCAACTCCAAGCCCGATCTCACCATCGAGACATGGGCTCACCAGAAGGCCCTA GAGCGCCTCGAGATGGAGAAATTGGCTCTCTCTTCCACTGATTCCGATTGA
AA sequence Show only first row Show all	>Lus10042351 pacid=23153559 polypeptide=Lus10042351 locus=Lus10042351.g ID=Lus10042351.BGIv1.0 annot-version=v1.0 MPTLQLFKSASTMLRQRLAGSLRTRGGHSGPSPWVTPGHEERPKGYLFSRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNSKPDLTIETWAHQKAL ERLEMEKLALSSTDSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42310			unknown protein		Lus10042351 [exp]	0	1
AT1G03910			unknown protein		Lus10027605 [exp]	2.4	0.8455
AT4G30010			unknown protein		Lus10015329 [exp]	4.9	0.8573
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	10.8	0.8384
AT3G22530			unknown protein		Lus10010549 [exp]	11.6	0.8246
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	15.2	0.8408
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	16.2	0.8110
AT4G37830			cytochrome c oxidase-related (...		Lus10011574 [exp]	16.5	0.8148
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	16.7	0.7959
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	17.9	0.8287
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	18.8	0.8351

Compare expression of checked genes

Lus10042351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.