Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12170 352 / 9e-123 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 326 / 2e-112 ATJ6, EMB1393 J-domain protein 6 (.1) AT1G59980 80 / 9e-17 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 79 / 2e-16 GFA2 gametophytic factor 2 (.1) AT3G62600 72 / 3e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT5G01390 71 / 4e-14 DNAJ heat shock family protein (.1.2.3.4) AT1G56300 69 / 5e-14 Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 68 / 1e-13 Chaperone DnaJ-domain superfamily protein (.1) AT1G21080 70 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT4G39150 70 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026315 [exp] 501 / 0 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10013402 [exp] 369 / 9e-129 AT3G12170 361 / 2e-126 Chaperone DnaJ-domain superfamily protein (.1) Lus10010323 [exp] 358 / 1e-124 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 83 / 2e-17 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 82 / 2e-17 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 82 / 4e-17 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 78 / 5e-16 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10030827 [exp] 72 / 4e-14 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10023181 [exp] 72 / 5e-14 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051800 [exp] 392 / 3e-138 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G056400 [exp] 381 / 1e-133 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 76 / 2e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 74 / 1e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.017G016100 [exp] 72 / 4e-14 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 72 / 4e-14 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 71 / 6e-14 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 72 / 8e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G074600 [exp] 71 / 9e-14 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G198000 [exp] 71 / 1e-13 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10042353 pacid=23153971 polypeptide=Lus10042353 locus=Lus10042353.g ID=Lus10042353.BGIv1.0 annot-version=v1.0 ATGGGAAAGAGAAAGAAATCTAGGGTTTCACGCGAAGACGAGGAAATCGAATTGGAAGGAGAAGAAGAACGAAACGAGGATCAGAATGACAATGAGACCA CCAACCAGTCCTCTGGAGACGAGAAAAGCCTTTACGAGGTTCTTGGTATTAAGAAGACGGCCACTCAGCAAGAGATAAAGAAAGCATACCACAAATTGGC CCTGAGACTCCATCCCGACAAAAACCCAGATGATGAGGAAGCGAAAGAGAAGTTTCAGCAATTACAGAAGGTGATTTCCATTCTCGGAGATGAGGAAAAG CGGGCAGTCTATGATCAAACTGGCTGTGTTGATGATGCGGACCTTGCAGGTGATGTTGTCCAGAATTTGAAGGAATTTTTCAGAACAATGTACAAAAAGG TTACAGAAGCTGATATTGAAGAGTTTGAAGCAAATTATAGAGGATCTGATTCGGAGAAAAATGACTTGGTTGACCTTTATAAGCAGTGCAAGGGCAGTAT GAATAGGGTCTTCTGTTCTATGCTCTGCTCTGACCCTAAGCTTGATTCACACCGATTCAAAGTCATTCTGGATGAGGCAATATCTGCAGGAGAAGTGAAA GCAACAAAGGGTTACGAAAAATGGGGGAAGAAAGTAGAAAGAACGAAGGCGCCTAAGAATCTGTTGAGAAGGAGAGGTAAACAGAAGCATAGAGCGGTGG AAGACGATCTACTTGCTCTTATGGCGAATAGGCAGAGTGAGAGGAAAGATCGGTTTGATTCAATGTTCTCTTCACTTGTGTCCAAATATGGGGGAGGTAG CACACCTTCAGAACCAACTGATGAGGAGTTTGAAGCCACCAGAAAGAAAATGGAGAGCCGTAGAGCATCATCATCCAAGAAGGCTAAGAGAAAGTAG
AA sequence Show only first row Show all	>Lus10042353 pacid=23153971 polypeptide=Lus10042353 locus=Lus10042353.g ID=Lus10042353.BGIv1.0 annot-version=v1.0 MGKRKKSRVSREDEEIELEGEEERNEDQNDNETTNQSSGDEKSLYEVLGIKKTATQQEIKKAYHKLALRLHPDKNPDDEEAKEKFQQLQKVISILGDEEK RAVYDQTGCVDDADLAGDVVQNLKEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLVDLYKQCKGSMNRVFCSMLCSDPKLDSHRFKVILDEAISAGEVK ATKGYEKWGKKVERTKAPKNLLRRRGKQKHRAVEDDLLALMANRQSERKDRFDSMFSSLVSKYGGGSTPSEPTDEEFEATRKKMESRRASSSKKAKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	0	1
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	4.1	0.9221
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	4.2	0.8864
AT5G49170			unknown protein		Lus10022872 [exp]	4.9	0.8907
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	7.1	0.9085
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	10.2	0.9028
AT5G38070			RING/FYVE/PHD zinc finger supe...		Lus10002282 [exp]	12.2	0.8580
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	13.4	0.8920
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	15.2	0.8905
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	15.7	0.8875
AT5G10400			Histone superfamily protein (....		Lus10031822 [exp]	17.9	0.8976

Compare expression of checked genes

Lus10042353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.