Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57650 609 / 0 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT1G51260 487 / 6e-173 LPAT3 lysophosphatidyl acyltransferase 3 (.1) AT1G75020 152 / 2e-42 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2) AT3G18850 151 / 3e-42 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026312 [exp] 765 / 0 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10011298 [exp] 683 / 0 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10040492 [exp] 679 / 0 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10027375 [exp] 437 / 3e-152 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1) Lus10002556 [exp] 436 / 5e-152 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1) Lus10018803 [exp] 173 / 6e-50 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10032727 [exp] 172 / 8e-50 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053000 [exp] 634 / 0 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.006G055000 [exp] 615 / 0 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.001G259200 [exp] 514 / 0 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1) Potri.009G054500 [exp] 367 / 2e-125 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1) Potri.T125204 [exp] 170 / 4e-49 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.009G112307 [exp] 170 / 5e-49 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.002G133100 [exp] 169 / 6e-49 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.014G040600 [exp] 163 / 2e-46 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042356 pacid=23153760 polypeptide=Lus10042356 locus=Lus10042356.g ID=Lus10042356.BGIv1.0 annot-version=v1.0 ATGGCGATTGCAGCGGCTGCTGTCATCGTCCCTCTTGGTGTTCTCTTCTTCTTTTCTGGTTTAGTCGTGAATCTCATCCAGGCAATTTGCTTCATCCTCA TACGTCCGCTATCCAAGAGCACTTACAGAACCATTAACAGAGCCGTCGCCGAGTTGCTCTGGCTGGAGCTGGTCTGGATCGTTGATTGGTGGGCAGGGGT TAAGATTGAAGTATACATTGATAATGAGACTTTTCGCCAAATGGGTAAGGCCAAATCTCTGATCAGAAAAGAACATGCACTTGTCTTATGCAACCATAAA AGTGACATTGATTGGCTAGTTGGATGGGTTTTGGCACAGCGATCGGGATGCCTTGGCAGTGCATTGGCTGTCATGAAGAAGTCATCTAAACTCCTTCCGG TCATAGGTTGGTCTATGTGGTTCTCTGAATACCTTTTCCTGGAACGAAGTTGGGCAAAAGATGAAAACACATTAAAATCAGGTCTCCAGCGGCTACATGA CTTTCCTCGGCCCTTTTGGCTAGCTCTTTTTGTTGAAGGAACTCGTTTTACACAGGCAAAGCTCTTAGCTGCACAAGAGTATGCAGCATCGGCTGGGTTG CCTGTCCCTAGAAATGTCTTGATTCCTCGCACGAAGGGATTTGTATCTGCAGTAAGCAACATGCGGTCATTTGTACCAGCCATTTACGATGTAACTGTGG CTATCCCTAAAACTTCACCTCAACCAACAATGCTCAGACTGTTCAAGGGACAGTCGTCTGTGGTTCATGTACATCTCAAGCGCCACTCCATGAAGGACCT GCCTTCTACAGACGATGCTGTTGCGCAATGGTGTAGGGATTTATTCGTGGCCAAGGATGCACTTCTAGACAAGCACAACGTTGATGGTACATTTAAGGAT GGGGAACTGCAGAACATGGGCCGGCCAATCAAGTCTCTCGTGGTTGTTACTTGGTGGGCATCTTTACTTGTGTTTGCGACCTTGAAGTTCCTTCAGTGGT CCGCACTTCTATCTTCGTGGAGAGGCATTGCCATTTCTGCAGCAGGTCTGGCAGTCGTTACAGGACTGATGCAGGTACTCATAAGATTTTCTCAATCGGA GCGTTCGACTCCTGCCAAAGTTTTCCCAACAAAGTCCAAGAATGAAGGGGGAGAGCATTCTGAGGGAGGAGGAGATAAAAAGCAGTGA
AA sequence Show only first row Show all	>Lus10042356 pacid=23153760 polypeptide=Lus10042356 locus=Lus10042356.g ID=Lus10042356.BGIv1.0 annot-version=v1.0 MAIAAAAVIVPLGVLFFFSGLVVNLIQAICFILIRPLSKSTYRTINRAVAELLWLELVWIVDWWAGVKIEVYIDNETFRQMGKAKSLIRKEHALVLCNHK SDIDWLVGWVLAQRSGCLGSALAVMKKSSKLLPVIGWSMWFSEYLFLERSWAKDENTLKSGLQRLHDFPRPFWLALFVEGTRFTQAKLLAAQEYAASAGL PVPRNVLIPRTKGFVSAVSNMRSFVPAIYDVTVAIPKTSPQPTMLRLFKGQSSVVHVHLKRHSMKDLPSTDDAVAQWCRDLFVAKDALLDKHNVDGTFKD GELQNMGRPIKSLVVVTWWASLLVFATLKFLQWSALLSSWRGIAISAAGLAVVTGLMQVLIRFSQSERSTPAKVFPTKSKNEGGEHSEGGGDKKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	0	1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	7.6	0.8668
AT2G26840			unknown protein		Lus10036059 [exp]	11.4	0.8133
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	11.7	0.8050
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Lus10017047 [exp]	12.6	0.8175
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10038217 [exp]	13.1	0.8192
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	13.5	0.8316
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	13.7	0.8337
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	14.9	0.8593
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	16.9	0.8422
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	18.1	0.8444

Compare expression of checked genes

Lus10042356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.