Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57630 1186 / 0 exostosin family protein (.1.2) AT5G22940 124 / 1e-29 F8H FRA8 homolog (.1) AT5G61840 106 / 3e-24 GUT1, IRX10-L Exostosin family protein (.1) AT2G28110 104 / 2e-23 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT1G27440 103 / 3e-23 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT4G38040 80 / 2e-15 Exostosin family protein (.1) AT5G16890 77 / 2e-14 Exostosin family protein (.1) AT5G11610 72 / 8e-13 Exostosin family protein (.1.2) AT1G21480 69 / 5e-12 Exostosin family protein (.1.2) AT5G37000 67 / 4e-11 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026311 [exp] 1554 / 0 AT3G57630 1108 / 0.0 exostosin family protein (.1.2) Lus10043209 [exp] 110 / 2e-25 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 110 / 2e-25 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 107 / 1e-24 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 105 / 5e-24 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 104 / 2e-23 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 98 / 2e-21 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10003870 [exp] 77 / 2e-14 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10039145 [exp] 75 / 1e-13 AT5G16890 679 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054800 [exp] 1275 / 0 AT3G57630 1239 / 0.0 exostosin family protein (.1.2) Potri.012G109200 [exp] 109 / 3e-25 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 109 / 3e-25 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 106 / 3e-24 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 105 / 9e-24 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.003G162000 [exp] 105 / 1e-23 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 99 / 5e-22 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 78 / 1e-14 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 75 / 7e-14 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.018G043700 [exp] 74 / 3e-13 AT5G25820 635 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10042357 pacid=23153833 polypeptide=Lus10042357 locus=Lus10042357.g ID=Lus10042357.BGIv1.0 annot-version=v1.0 ATGATTGCGGTGGTGCAGAAATGGAAATGCTCGTGGTCTATGACTGCTGGAATTGCTTCAGCAGTGGCATTGGTTTCAATAGTTTCTCTATTTCTGTTTC CTGTTGATCCTTCATTTGATTACCTGAGGATCCGTGATGCTTCCAAGAGTAGATGTGTCCTTCCTAAAGGAACACTTGGACCAGGAGCTGGAACTGGACA GGTTTGGCAAAATTTGAAACCTAGTGTAGATCTGCACCGTAGGTTTCCTGGCGATTTGCACGGGGCAGTGGTTTATCGCCAGACGCCATGGAAGGCTGAT ATTGGAAGGTGGCTTTCAGGGTGTGATCCAATTGCTAAGGAAGCCAGCATTTCCGAGATAGTAGGTGGAAGGGGCTGCAAAGATGACTGTAATGGTCAAG GTGTTTGTAACTACGAATTGGGAGTATGTCGCTGCTTCCACGGATTTGGAGGGGAAGGATGCTCTGAGAGAATACAGCTGAAATGTAACCATCCTACTAC ACCAGAGCAACCATATGGGCGATGGGTTGTTTCAATTTGCGCAACACACTGTGATACAACAAGAGCTATGTGCTTCTGTGGCGAGGGTACAAAATATCCA AATCGTCCCGTGGCAGAAGCTTGTGGTTTCCAAGTGAACGTACCTGTTGAACCTGATGCTCCCAAATTGACGGATTGGTCAAAAGACGACCTAGAAAATA TTTTCACAACAAACAGTAGCAAAGCAGGGTGGTGCAATGTCGACCCTGCCGAAGCATATGCTTCGAGGGTGAAATTCAAAGAGGAATGCGACTGCAAGTA TGATGGTCTTTCTGGGCGATTTTGCGAGGTGCCTGTACAAAGTGTGTGTATTAATCAGTGCTCTGGACATGGGCATTGCCGTGGTGGCTTTTGTCAGTGT CGCAGTGGATGGTATGGGATAGACTGTAGCATCCCTTCTGTTCTATCTCCATTAAGCGGCTGGCCTAGGTGGCTTCGCCCTTCTCAGCTTGATATTCCTG AAAACGGGAACATGTCCACTAAACAATTCAATCTTAATGCTCTTGTGAAGAAGAAGAGGCCCTTGGTCTATGTATATGATTTGCCTCCAGAGTTCAATAG TTTGCTTCTTGAGGGGAGGCATTTTAAGCTCGAATGCGTTAACAGAATCTACGACGATAGGAATGCAACAATATGGACAGACCAACTTTATGGGTCTCAG ATTGCAATTTACGAAAGTCTTTTAGCTAGTGCACATCGTACATTGAATGGTGAAGACGCTGACTTTTTCTTTGTCCCTGTTCTTGATTCATGCATCATCA CTCGAGCAGATGATGCACCTCACTTGGGATTGGAGGAACATAGGGGCATAAGGAGCTCTTTCACGTTGGAGATATATCGGAAGGCATATGATCATATAGT TGAGCATTATCCTTTTTGGAACCGTTCACTGGGCAGAGACCACATTTGGTCTTTTTCATGGGATGAAGGTGCTTGTTACGCTCCTAAGGAGATATGGAAC AGCATGATGTTGGTTCATTGGGGGAATACGAATTCTAAGCATAATCATTCAACGACAGCCTATTGGGCTGATAACTGGAATAACATCACGTCTGATAGAA GAGGCACTCATCCATGCTTTGATCCTGACAAAGATCTTGTACTTCCTGCCTGGAAACGCCCTGATGCCAGTTCCTTAAGCATGAAACTTTGGGCCCGGTC TCTTGAGATGCGGAAGACATTATTCTACTTCAATGGAAATCTTGGACCAGCATATGAATTTGGAAGGCCAGAAGCTTCGTATAGTTTGGGTATCAGGCAG AAACTTGCTGAAGAGTTTGGATCAAGTCCTAACAAGGACGGGAAGCTTGGGAAGCAGCATGTAGATGATGTAATTGTAACATCAATGCGCACTGAAAATT ATCACGTTGATCTAGCAAGTTCAGTATTTTGTGGAGTATTGCCTGGAGATGGTTGGAGTGGCCGTATGGAAGATAGCATCTTGCAAGGTTGTATTCCTGT GGTCATTCAGGATGGGATTTTTCTGCCATATGAGAATGTACTAAACTTTGAAAGTTTCGCGGTCAGAATTCAAGAGGACGAAATCCCGAACTTGATAACA GTTCTTAGGGCATTCAATGATACAGAAATCGGATTCAAGTTGAGGAATGTACAGAAACTATGGCAGAGATTTGTGTATCGCGATTCGTTGTTGCTTGAAG CTGAGAGACAGAAAACTGAGTTGGGTTTCGTGGAAGATTGGGCAGTTGAAGTATCAAAATTGACTGAGGATGATGTCTTCGCAACATTTCTCCAGATTCT GCACTACAAGTTGCATAATGATCCATGGAGGGAGCAGGTTGGTGATGGGAATAAAGATTTTGGAGTACCACGAGAATGCTCAAGGGAAGGAAGCAAATGG AAGGGTCCATGA
AA sequence Show only first row Show all	>Lus10042357 pacid=23153833 polypeptide=Lus10042357 locus=Lus10042357.g ID=Lus10042357.BGIv1.0 annot-version=v1.0 MIAVVQKWKCSWSMTAGIASAVALVSIVSLFLFPVDPSFDYLRIRDASKSRCVLPKGTLGPGAGTGQVWQNLKPSVDLHRRFPGDLHGAVVYRQTPWKAD IGRWLSGCDPIAKEASISEIVGGRGCKDDCNGQGVCNYELGVCRCFHGFGGEGCSERIQLKCNHPTTPEQPYGRWVVSICATHCDTTRAMCFCGEGTKYP NRPVAEACGFQVNVPVEPDAPKLTDWSKDDLENIFTTNSSKAGWCNVDPAEAYASRVKFKEECDCKYDGLSGRFCEVPVQSVCINQCSGHGHCRGGFCQC RSGWYGIDCSIPSVLSPLSGWPRWLRPSQLDIPENGNMSTKQFNLNALVKKKRPLVYVYDLPPEFNSLLLEGRHFKLECVNRIYDDRNATIWTDQLYGSQ IAIYESLLASAHRTLNGEDADFFFVPVLDSCIITRADDAPHLGLEEHRGIRSSFTLEIYRKAYDHIVEHYPFWNRSLGRDHIWSFSWDEGACYAPKEIWN SMMLVHWGNTNSKHNHSTTAYWADNWNNITSDRRGTHPCFDPDKDLVLPAWKRPDASSLSMKLWARSLEMRKTLFYFNGNLGPAYEFGRPEASYSLGIRQ KLAEEFGSSPNKDGKLGKQHVDDVIVTSMRTENYHVDLASSVFCGVLPGDGWSGRMEDSILQGCIPVVIQDGIFLPYENVLNFESFAVRIQEDEIPNLIT VLRAFNDTEIGFKLRNVQKLWQRFVYRDSLLLEAERQKTELGFVEDWAVEVSKLTEDDVFATFLQILHYKLHNDPWREQVGDGNKDFGVPRECSREGSKW KGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	0	1
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	9.7	0.8343
AT1G33110			MATE efflux family protein (.1...		Lus10003869 [exp]	11.5	0.8057
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	11.7	0.7991
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	22.0	0.7711
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	22.8	0.8324
AT5G50090			unknown protein		Lus10004229 [exp]	24.7	0.8020
AT1G17100			SOUL heme-binding family prote...		Lus10029117 [exp]	30.0	0.7586
AT2G41950			unknown protein		Lus10016243 [exp]	31.8	0.7934
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023456 [exp]	32.5	0.6913
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	39.8	0.7846

Compare expression of checked genes

Lus10042357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.