Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57610 787 / 0 ADSS, ATPURA adenylosuccinate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026310 [exp] 915 / 0 AT3G57610 812 / 0.0 adenylosuccinate synthase (.1) Lus10040512 [exp] 834 / 0 AT3G57610 804 / 0.0 adenylosuccinate synthase (.1) Lus10011317 [exp] 834 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087900 [exp] 778 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00709 [flax] [poplar] Adenylsucc_synt Adenylosuccinate synthetase
Representative CDS sequence Show only first row Show all	>Lus10042358 pacid=23153914 polypeptide=Lus10042358 locus=Lus10042358.g ID=Lus10042358.BGIv1.0 annot-version=v1.0 ATGGACGTCTCGTCTTCCTTAGCTCTCGACTCCAATCCTTTGGCCGCTTCTCCTTCTCGCTACTCCCTCAGCCGCCGCTTCCTCCCCCACCACCAAGCCC AGCGCCTTTCTTTCTCATCTGCTGCTCCTCAACGCAACTCCATCTCCTGCTCCTCCGTCAAGTCTCCACCCTCTATCACTGTGGCTGACTCTCCTTCAGT GGACTCGGTTGCTCGAATCGGATCCCTGAGTCAAGTCTCCGGAGTGCTTGGATGCCAGTGGGGAGACGAAGGCAAAGGCAAACTCGTCGACATCTTGGCT CACCATTTCGACGTCGTCGCCCGCTGCCAGGGCGGAGCAAATGCTGGTCACACAATCTATAACTCCGAGGGGAAGAAATTCGCCCTTCACCTGGTTCCTT CTGGTATTCTTAACGAGGATACACTCTGTGTTATTGGGAATGGAGTTGTGGTGCATTTGCCTGGTCTCTTCAAGGAAATTGATGGTTTGGAAGCCAATGG TGTTTCCTGCAAAGGGAGGATCTTGGTCTCCGATCGTGCTCACCTCTTGTTTGATTTCCATCAAGAAGTTGATGGGCTGAGAGAAGCCGAGCTTGCTAAC TCATTCATTGGGACTACCAAGAGAGGGATTGGACCTTGCTACTCGAGCAAGGTCATCCGCAATGGCATCAGGGTAAGTGACCTGAGGCACATGGATACTT TCCCTGACAAGCTTGATGTTTTGTTGTCCGACGCTGCTTCGAGATTCCGAGGTTTTAACTATTCCCCTGAAATGCTCAGGGAAGAGGTTGAGAAGTATAA GAGATTTTCTGAGAGGTTGGAGCCGTACATTGCTGATACTGTGTATGTCATGAATGAGTTCATCAACCAGAAGAAGAAGGTTTTGGTGGAAGGTGGCCAG GCCACCATGCTGGATATTGACTTTGGAACTTACCCATTTGTTACATCCTCCAGCCCATCAGCTGGTGGAATCTGTACCGGTCTCGGTATAGCTCCAAGGG TTCTTGGTGATATTATTGGCGTGGTAAAAGCTTACACTACGAGGGTTGGATCTGGTCCTTTCCCCACAGAAATATTGGGACAAGGAGGTGATCTCCTTAG GTTAGCTGGACAAGAATTCGGAACAACGACTGGTCGCCCTCGTCGTTGTGGTTGGCTGGATATTGTTGCGATGAAGTATTGCTGTCAGATTAACGGTTTC TCCTCCTTGAATCTGACTAAACTGGACGTTTTGTCTGACCTTCCTGAAATCCAACTGGGGGTTTCATATAAGCTAACTGATGGTACACCAATTAACTCAT TTCCAGCAGATCTCAGCTTGCTTGAACAGCTCCAGGTTGAATTCGAGGTTCTACCAGGATGGCAGACTGATATTTCTTCGGCAAGAACCTACTCGGACCT CCCAAAGGCAGCACAGAGATACGTTGAAAGGGTAGAAGAGCTTGTTGGCGTACCAGTTCATTACATCGGCGTTGGCCCAGGACGAGATGCTCTCATCTAC AAATAA
AA sequence Show only first row Show all	>Lus10042358 pacid=23153914 polypeptide=Lus10042358 locus=Lus10042358.g ID=Lus10042358.BGIv1.0 annot-version=v1.0 MDVSSSLALDSNPLAASPSRYSLSRRFLPHHQAQRLSFSSAAPQRNSISCSSVKSPPSITVADSPSVDSVARIGSLSQVSGVLGCQWGDEGKGKLVDILA HHFDVVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLEANGVSCKGRILVSDRAHLLFDFHQEVDGLREAELAN SFIGTTKRGIGPCYSSKVIRNGIRVSDLRHMDTFPDKLDVLLSDAASRFRGFNYSPEMLREEVEKYKRFSERLEPYIADTVYVMNEFINQKKKVLVEGGQ ATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVLGDIIGVVKAYTTRVGSGPFPTEILGQGGDLLRLAGQEFGTTTGRPRRCGWLDIVAMKYCCQINGF SSLNLTKLDVLSDLPEIQLGVSYKLTDGTPINSFPADLSLLEQLQVEFEVLPGWQTDISSARTYSDLPKAAQRYVERVEELVGVPVHYIGVGPGRDALIY K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	0	1
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10027234 [exp]	2.4	0.8784
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	4.5	0.8115
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	6.5	0.7965
AT5G07900			Mitochondrial transcription te...		Lus10016551 [exp]	6.9	0.7743
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	8.9	0.8232
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	10.4	0.8393
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	11.2	0.7756
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	13.4	0.7981
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	15.5	0.8187
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	15.9	0.8119

Compare expression of checked genes

Lus10042358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.